Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq34050 82.4 7e-11 >seq34050 Length=239353 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||||||||| || || | ||||||||||| || | || || || || | ||| Sbjct 39583 CACGCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGATAAC 39524 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || |||||||| || || ||||| | ||| ||||| ||| ||| ||| || ||||| Sbjct 39523 CCCGGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAG 39464 Query 13992 ATTCCCTCAACTGCAGCAAACGC 14014 || |||||||| |||||| || Sbjct 39463 ATCCCCTCAACACAAGCAAAGGC 39441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479263863160000