Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq34050 93.3 3e-14 seq31522 93.3 3e-14 seq34423 89.7 4e-13 seq33279 89.7 4e-13 >seq34050 Length=239353 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || | |||||||| | ||| |||||| || | ||||||||||| Sbjct 44792 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 44851 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || | ||| || ||||| || |||| | ||| || || | ||| Sbjct 44852 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 44911 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || ||| | ||||| || | | |||||| ||| |||||| Sbjct 44912 ATGCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCG-GAGCTCTCGAC 44970 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || |||||||| ||||||||||| || ||||| Sbjct 44971 CTCGAGAGTAATAGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 45018 >seq31522 Length=43835 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 42880 TCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCG 42939 ||||| ||||| || | | || | ||||| ||| ||||| || | | |||||||| Sbjct 35404 TCGCCACCACGAAGACGGAGAACAAGATGGAGAGTTGATTCCTTCTGGATACTGTAATCG 35345 Query 42940 GACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCC 42999 | | || || | || || | ||||| || ||||| ||||| ||||||||||| | Sbjct 35344 GCAAGAGTGCGCCCATCCTCAAGCTGTTTCCCTGCAAATATCAAGCGCTGTTGATCTGGA 35285 Query 43000 GGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CT 43057 || | |||||||| || ||| ||| | | || || | ||| ||| || ||| | Sbjct 35284 GGAATTCCTTCTTTATC-CTGAATCTTCGCCTTCACGTTCTCAATTGTATC-TGAGCTTT 35227 Query 43058 CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || |||| || || ||||| || || |||||||||||||| |||||||| Sbjct 35226 CAACTTCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCAT 35175 >seq34423 Length=256361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || | |||||| || | |||| |||||| || | |||||||||| Sbjct 118493 CCACCGCGGAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 118552 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || | ||||||||||| || || | | ||| ||||| | || Sbjct 118553 AGGGTACGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGATCTGGGGGG 118612 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | ||||| | ||| |||||| ||| || || Sbjct 118613 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCAATTGTGTC-TGAGCTTTCAAC 118671 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || |||||||| ||||| ||||| |||||||| Sbjct 118672 CTCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCAT 118719 >seq33279 Length=59633 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| |||| ||| |||||| || | ||||||||||| || ||||| | || || Sbjct 12704 CACCAAGTGGAGAGTTGACTCCTTCTGGATATTGTAATCGGCCAGGGTACGGCCATCCTC 12763 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | || || |||||||| ||||| | ||| || || | || | || || || || Sbjct 12764 AAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 12823 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| | ||||| || ||| |||||| ||| |||||| || | || || || | Sbjct 12824 GATCTTGGCCTTGACGTTGTCAATGGTGTCG-GAGCTCTCGACCTCGAGAGTGATTGTCT 12882 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||| || ||||| || || || ||||| Sbjct 12883 TTCCGGTGAGGGTTTTGACGAAGATCTGCAT 12913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381009849289200