Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq33140 104 3e-17 >seq33140 Length=116131 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||||| | || || || || || || |||||| ||| ||||| || || Sbjct 77776 AGTTCCACCATTAAAAAGAGTTGGGGATGCATGTGTGAACCATCTTTGAGACATTAAATG 77835 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 |||||||| || || ||||| ||||| | ||| || || || || || || | ||| | Sbjct 77836 GTACGTCTTGATGGCAGATTCAATATCATCCTTG-TGGATCCCAACAGCAACTCTCATCA 77894 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||||||||| || || ||||| | ||| | | || || | ||| ||| | || | Sbjct 77895 ACATATGCTGTGGCCTCTCAACAACTTTGCCTTGAACCTTTAAGAGGTAAGATCTCTCAA 77954 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| |||||||| || | || ||||||||| || || || || Sbjct 77955 GTGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGGTCATATATGAT 78003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670489872824000