Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq31522 114 9e-21 seq33714 91.5 1e-13 seq34050 86.0 5e-12 >seq31522 Length=43835 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| || | ||| | ||| || || || ||||| || || ||||||||| | Sbjct 29172 CCACCGCGCAACCTCAGAACCAGATGCAGCGTCGATTCTTTCTGGATATTGTAATCGGCT 29113 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| | || || | ||||| || ||| | ||||| | || || || ||| Sbjct 29112 AGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCTGGAGGA 29053 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||| |||| |||||| ||| || | || || ||||| |||| || Sbjct 29052 ATTCCTTCTCTGTCCTGAATTTTCGCCTTCACGTTATCAATTGTATCTGAGCTTTCAACT 28993 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| || ||||| || ||||||||||| ||||| ||||||||| Sbjct 28992 TCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCATA 28945 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || || || || || || || |||||||| ||| | | | | || || Sbjct 35384 AACAAGATGGAGAGTTGATTCCTTCTGGATACTGTAATCGGCAAGAGTGCGCCCATCCTC 35325 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || || ||||||| || ||||| || |||||||||||||| || Sbjct 35324 AAGCTGTTTCCCTGCAAATATCAAGCGCTGTTGATCTGGAGGAATTCCTTCTTTATCCTG 35265 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| || | || || ||||| |||| || |||| ||| || ||||| Sbjct 35264 AATCTTCGCCTTCACGTTCTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATCGTTTT 35205 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||||||||| ||||| ||||||||| Sbjct 35204 CCCAGTCAGAGTTTTCACAAAGATTTGCATA 35174 >seq33714 Length=161502 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| |||||||| || ||||| || ||| | | | || || | || Sbjct 21856 ATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGCAAGAGTGCGTCCATCGTCAAGCTG 21797 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | |||| | ||||| || ||||||||||| || || ||| || Sbjct 21796 CTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTT 21737 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||||||| | || |||||||| | || || || | ||| ||||| || || || Sbjct 21736 AGCCTTTACATTGTCAATGGTATCTGAGCTCTCAACCTCAAGGGTGATGGTCTTGCCAGT 21677 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 |||||||||||||| || |||||| Sbjct 21676 TAGAGTTTTTACAAAGATCTGCATA 21652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || ||||| |||||||| || ||| | | | ||||| | || Sbjct 22083 TGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTGCGGCCATCTTCAAGCTGC 22024 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | || | | |||||||| |||||||||||||| || ||| || Sbjct 22023 TTTCCAGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAATCTTA 21964 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| | || |||||||| | || || || | || ||||| || || || Sbjct 21963 GCCTTTACATTGTCAATGGTATCTGAGCTCTCAACCTCAAGTGTGATGGTCTTGCCAGTT 21904 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 |||||||||||||| || |||||| Sbjct 21903 AGAGTTTTTACAAAGATCTGCATA 21880 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| |||||||| ||||||||||| || | | | ||||| | || Sbjct 22831 ATGGAGGGTGGACTCTTTTTGGATGTTGTAATCAGCAAGTGTACGACCATCTTCAAGCTG 22772 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | |||| | |||||| || ||||||||||| || || ||| || Sbjct 22771 CTTTCCAGCAAAAATCAGCCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTT 22712 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || |||||||| | || || || | || ||||| || || || Sbjct 22711 AGCCTTCACATTGTCAATGGTATCCGAGCTCTCAACTTCAAGAGTGATGGTCTTGCCAGT 22652 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| || ||||| Sbjct 22651 AAGAGTTTTCACAAAGATCTGCAT 22628 >seq34050 Length=239353 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||||| | ||| |||||||||||||| || || || || ||||||||| Sbjct 44792 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 44851 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || | ||| || || ||| | |||| | || ||||| || Sbjct 44852 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 44911 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || ||| ||| ||| ||| | || ||||| ||| | || || Sbjct 44912 ATGCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACC 44971 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| || || || || || ||||| ||||| || ||||| Sbjct 44972 TCGAGAGTAATAGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 45018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||||| | ||| |||||||||||||| || || || || |||||||| | Sbjct 44564 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCCGCT 44623 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| |||| || | || || || ||| | || | | || ||||| || Sbjct 44624 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGCCTCTGCTGGTCTGGCGGG 44683 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || ||||| || || ||| || || | || || |||||| |||| || Sbjct 44684 ATTCCCTCCTTGTCCTGGATCTTAGCT-TTCACGTTGTCAATCGTATCGGAGCTTTCAAC 44742 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| || || || || || ||||| || || || ||||| Sbjct 44743 CTCCAAGGTAATCGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCAT 44790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361837551833400