Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq31522 95.1 1e-14 seq33784 91.5 1e-13 seq34240 82.4 6e-11 >seq31522 Length=43835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||||||| | |||| |||| ||| || || || || ||||||||||| || Sbjct 29172 CCACCGCGCAACCTCAGAACCAGATGCAGCGTCGATTCTTTCTGGATATTGTAATCGGCT 29113 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| |||||||||||||| |||| | ||||||||||| || Sbjct 29112 AGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCTGGAGGA 29053 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||| |||| ||||||| || || | | | ||||| || | Sbjct 29052 ATTCCTTCTCTGTCCTGAATTTTCGCCTTCACGTTATCAATTGTATCTGAGCTTTCAACT 28993 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || ||||| || || | |||||| ||||| |||||||| Sbjct 28992 TCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCAT 28946 >seq33784 Length=161669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || |||||||||||||| ||||| || || | ||| | | ||||| Sbjct 105638 CACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGTGTCCTCCCATCCTC 105579 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| |||| |||| ||||||||| ||| | ||| || ||||| Sbjct 105578 GAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTG 105519 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | |||||| | |||| || | || ||||| || Sbjct 105518 AATCTTTGCTTTAACATTATCAATAGTATCAGAACTCTCCACCTCAAGAGTGATGGTCTT 105459 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| || ||||| Sbjct 105458 CCCAGTCAAGGTCTTGACAAAGATCTGCAT 105429 >seq34240 Length=378565 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | || || |||| ||| | || || ||||| || || |||||||| | Sbjct 153542 TTCCTCCCCTAAGTCTCAAAACCAGGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCAG 153601 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | || |||| |||||| || ||| |||| |||||||||||||| || Sbjct 153602 CCAGAGTCCTTCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGGG 153661 Query 18933 GCACGCCCTCTTTGTC--GGCAAT 18954 | | || |||||||| |||||| Sbjct 153662 GGATACCTTCTTTGTCCTGGCAAT 153685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414181728295600