Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq33714 84.2 2e-11 >seq33714 Length=161502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAA 43988 ||| ||||| |||||||| || | || || ||| |||| || | || |||||||||| Sbjct 21616 CTCCTTTTGGATATTATAGTC-TGCAAGTGTACGGCCATCTTCAAGCTGCTTTCCTGCAA 21558 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | |||| ||| || || || |||| | ||||| |||||| || ||| || || Sbjct 21557 AAATCAGCCGCTGTTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGCCTTAACAT 21498 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 || ||| ||||| | ||| || |||| ||||| || || || || | |||||| | Sbjct 21497 TATCAATGGTATCAGAACTCTCAACCTCGAGAGTAATAGTCTTTCCAGTAAGAGTCTTTA 21438 Query 44109 CAAATATTTGCAT 44121 |||| || ||||| Sbjct 21437 CAAAGATCTGCAT 21425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354442933855200