Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq34240 102 7e-17 seq33279 84.2 2e-11 seq34050 82.4 6e-11 >seq34240 Length=378565 Score = 102 bits (112), Expect = 7e-17 Identities = 117/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | ||||| |||| || ||||| ||||| || || || Sbjct 153531 TTTAATCATAGTTCCTCCCCTAAGTCTCAAAACCAGGTGAAGTGTTGATTCCTTCTGGAT 153590 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| ||| ||| | ||||||||| |||||||| ||| |||| || ||||| Sbjct 153591 GTTGTAATCAGCCAGAGTCCTTCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTCTG 153650 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC--GGCAAT 20121 ||||| ||| | ||||||||||| |||||| Sbjct 153651 CTGATCAGGGGGGATACCTTCTTTGTCCTGGCAAT 153685 >seq33279 Length=59633 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 19993 CCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA 20052 ||| | ||||||||| || ||||| || || || ||||||||||| | | || Sbjct 12014 CCTGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGGCC 12073 Query 20053 ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTT 20112 ||| |||| || || || || | ||||||||||| ||||| ||| | |||||||| Sbjct 12074 ATCCTCCAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGAATTCCTTCTTT 12133 Query 20113 GTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAAT 20172 ||| |||||| ||||| | ||| | ||| |||| || | ||| || Sbjct 12134 GTCCTGGATTTTTGCCTTCACGTTATCAATTGTGTCGGAGCTTTCCACCTCGAGGGTGAT 12193 Query 20173 GGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| |||||||| | || |||||||| || ||||| Sbjct 12194 GGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 12229 >seq34050 Length=239353 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || | | ||| | |||||| || || || || || || || |||||||| ||| Sbjct 44106 TTCCACCCCTGAGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 44165 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| ||| || | || ||||| ||| | || ||||||||||| || | Sbjct 44166 CAAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCAGGAG 44225 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| || || ||||| | | ||| || |||| |||| Sbjct 44226 GGATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTATCGGAGCTTTCCA 44285 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| |||||||| ||||| | || || || ||||| |||||| Sbjct 44286 CCTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTCACGAAAATCTGCATT 44335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419191398149400