Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq33157 105 6e-18 seq33279 95.1 1e-14 seq33784 91.5 1e-13 seq34050 87.8 2e-12 >seq33157 Length=145522 Score = 105 bits (116), Expect = 6e-18 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| || || |||||||| || ||||| || |||||||||||||||| ||| || | Sbjct 122093 CTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGGCCGTCCTCCAGCTGCTTTCCGGCGAA 122034 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| || || | | |||||||| ||||||| ||| | | Sbjct 122033 GATGAGCCGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCCTTCACATT 121974 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| |||||| ||| | ||||| || || || ||||| |||||||| Sbjct 121973 GTCGATGGTGTCGGAGGACTCCACCTCCAGGGTTATCGTCTTCCCCGTGAGGGTTTTCAC 121914 Query 48715 AAAAATCTGCATC-GTGTCTTGATCGAAGA 48743 || ||||||||| || |||| | ||||| Sbjct 121913 GAAGATCTGCATCTTTGCCTTGCTGGAAGA 121884 >seq33279 Length=59633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | || ||| | ||| |||||||| || |||||| |||||||||||||||| Sbjct 12002 ACCACCCCTCAGCCTGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCAG- 12060 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| || || | |||||||||||||| || || | || | | ||||||||| | Sbjct 12061 CAAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGG 12120 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| |||||| ||||| ||| | | || || |||| ||| Sbjct 12121 GAATTCCTTCTTTGTCCTGGATTTTTGCCTTCACGTTATCAATTGTGTCGGAGCTTTCCA 12180 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || |||||||| || || ||||| |||||||| Sbjct 12181 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 12229 >seq33784 Length=161669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCT 48575 ||| ||||| ||||| |||||||||||||||||| || || || |||| | | |||| Sbjct 105638 CACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGC-AAGTGTCCTCCCATCCT 105580 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | |||| | ||||||||||| || | | |||||||||| Sbjct 105579 CGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCT 105520 Query 48636 TAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| || | | | || ||||| | | |||| ||| | || ||||| Sbjct 105519 GAATCTT-TGCTTTAACATTATCAATAGTATCAGAACTCTCCACCTCAAGAGTGATGGTC 105461 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || | || || ||||| ||||||||| Sbjct 105460 TTCCCAGTCAAGGTCTTGACAAAGATCTGCATC 105428 >seq34050 Length=239353 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | || |||||||| ||| |||||| || || |||||||| || Sbjct 44792 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 44851 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| || ||||| ||| || | || | | |||||| ||| ||| Sbjct 44852 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 44911 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||| || ||| || ||||| | | ||||| |||| ||| | Sbjct 44912 ATGCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACC 44971 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || || || || ||||| || ||||||||||| ||||||||| Sbjct 44972 TCGAGAGTAATAGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCATC 45019 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCT 48569 ||| | ||| || ||||| ||| |||||| ||||||||||| || || || || || Sbjct 44119 CCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC-AAGAGTACGGC 44177 Query 48570 CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCT 48629 | ||||| |||||||| || | | || | | ||| || || || | | ||||| Sbjct 44178 CATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCAGGAGGGATGCCTTCCT 44237 Query 48630 TGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTA 48689 ||||| || ||| ||| | | || ||||||| ||| ||| | || | Sbjct 44238 TGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTATCGGAGCTTTCCACCTCCAGGGTGA 44297 Query 48690 TGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||| ||||||||||| ||||| ||||||||||| Sbjct 44298 TGGTTTTCCCGGTGAGAGTCTTCACGAAAATCTGCAT 44334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420853828477400