Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq33795 161 2e-35 seq34400 145 1e-30 seq33451 131 3e-26 seq31539 123 4e-24 seq34352 118 2e-22 seq33871 114 2e-21 seq2246 100 4e-17 seq34175 95.1 2e-15 >seq33795 Length=142782 Score = 161 bits (178), Expect = 2e-35 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| ||||| || | ||| || || ||||||||||| ||||| ||||| || || Sbjct 3901 GCTAAACGTCACCGTAAGGTTCTCCGGGACAACATCCAAGGCATCACGAAGCCGGCCATT 3960 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||||||||| |||||| ||||||| | |||| || |||| | Sbjct 3961 CGCCGTCTGGCTCGCCGTGGTGGAGTGAAGCGTATCTCTGGCCTCATCTACGAGGAGACT 4020 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| |||||||| || ||| | ||| || ||| Sbjct 4021 CGCGGCGTCCTCAAGATCTTCCTCGAGAACGTTATCCGCGACGCTGTTACCTACACTGAG 4080 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| | ||||| |||| ||||| | || | || ||| Sbjct 4081 CACGCTCGCCGGAAGACGGTCACTGCAATGGACGTCGTGTATGCTCTCAAGAGACAGGGC 4140 Query 16673 CG 16674 || Sbjct 4141 CG 4142 Score = 147 bits (162), Expect = 3e-31 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||| ||||| || || || ||||||||||| ||||| Sbjct 10977 CTCCGCGACAACATCCAAGGCATCACGAAGCCGGCCATTCGCCGTCTGGCTCGCCGTGGA 11036 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 11037 GGAGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 11096 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || ||| | ||| |||||||||||| || ||||| || Sbjct 11097 CTGGAGAACGTCATCCGCGACGCTGTTACCTACACCGAGCACGCTCGCCGGAAGACGGTA 11156 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| | ||||| |||||||||| | || | || ||||| Sbjct 11157 ACCGCAATGGACGTCGTCTATGCTCTCAAGAGGCAGGGCCG 11197 >seq34400 Length=201357 Score = 145 bits (160), Expect = 1e-30 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||||||||| ||| || || |||||||||||||| ||||||||||| Sbjct 121290 GACAACATCCAAGGAATCACGAAGTAGGCCATTCGTCGTCTGGCTCGCCGTGGTGGAGTG 121349 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||| | |||| | | |||| ||||||| |||| ||| | |||||||||||| || Sbjct 121350 AAGCATATCTCCGATCTCATCTACGAAGAGACTCGTAGTGTCCTCAAGATCTTCCTCGAG 121409 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| | ||| | ||| |||||||||||| | || ||||| |||||| | Sbjct 121410 AACGTGATCCGCAACGCTGTTACCTACACCGAGCACGCTCACCGGAAGACGGTCACCGCA 121469 Query 16640 ATGGA 16644 ||||| Sbjct 121470 ATGGA 121474 >seq33451 Length=173447 Score = 131 bits (144), Expect = 3e-26 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||| || | ||||| ||||| || || || ||||| ||||| ||||| ||||| Sbjct 159586 GACAACATCTAAAGCATCACGAAGCCGGCCATTCGCCGTCTAGCTCGCCGTGGCGGAGTG 159645 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||| | |||| | || ||||||| |||| ||||| || | |||||||||||| || Sbjct 159646 AAGCCTATCTCCAGTTTCATCTATGAGGAGACTCGTGGCGTCCTCAAGATCTTCCTCGAG 159705 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | | | ||||| || ||| | ||| | ||||||||| || ||||| |||||| | Sbjct 159706 AACATGATCCACGACGCTGTTATCTACATTGAGCACGCTCGTCGGAAGACGGTCACCGCA 159765 Query 16640 ATGGATATCGTCTATGC 16656 ||||| || || ||||| Sbjct 159766 ATGGACATTGTGTATGC 159782 >seq31539 Length=58674 Score = 123 bits (136), Expect = 4e-24 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| ||||| ||||| | || || ||||| |||||||||||||||| Sbjct 5949 GACAACATCCAAGGCATCACAAAGCCGACCATTCGCTGTCTGACTCGTCGTGGTGGAGTG 5890 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | | || || |||| ||| | ||| | |||||||||||| || Sbjct 5889 AAGCGTATCTCCGGTCTCATATACGAGGAGACTCGCGGTGTCCTCAAGATCTTCCTCGAG 5830 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | | | ||| ||| | | | ||| ||||| |||||| | ||||| |||||| Sbjct 5829 AACTTGATCTGTGACGTTGTTACCTACACCGAACACGCTCGCTGGAAGACGGTCACCGTA 5770 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| |||| ||||| | || || || ||| Sbjct 5769 ATGGACGTCGTGTATGCTCTCAAGCGACAGGGC 5737 Score = 114 bits (126), Expect = 2e-21 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 |||||||||||||||||||||| |||||| |||| | | ||||||| |||| ||| | Sbjct 7627 GTCTGGCTCGTCGTGGTGGAGTGAAGCGTATCTCCAGTCTCATCTATGAGGAGACTCGCG 7568 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 ||| | |||||||||| ||||| | | |||| || | | ||| |||||||||| Sbjct 7567 GTGTCCTCAAGATCTTCCCCAAGAACTTGATCCGCGACATTATTACCTACACCGAGCACG 7508 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || |||| |||||| | ||||| |||| ||||| | || || |||||| Sbjct 7507 CTCGTCGAAAGATGGTCACCGCAATGGACGTCGTGTATGCTCTCAAGCGACAAGGC 7452 >seq34352 Length=301206 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || || || |||||||||||| | || Sbjct 40680 CTTCGCGATAACATCCAGGGGATCACCAAGCCGGCCATTCGCCGTCTGGCTCGTAGAGGA 40621 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| || | ||||||| |||| | | || | || |||||| Sbjct 40620 GGCGTGAAGCGTATCTCCGGCCTCATCTATGAGGAGACCAGGGGAGTCCTCAAAATCTTC 40561 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || ||| || || | ||| || |||||||||| | ||||| || Sbjct 40560 CTCGAGAATGTGATCAGAGACGCCGTGACCTACACTGAGCACGCTAGGAGGAAGACCGTG 40501 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| ||||||| || | || | || ||| | | | |||||||| ||| Sbjct 40500 ACGGCGATGGACGTCGTCTACGCCCTCAAGAGGCAGGGCAGGACTCTGTATGGTTTCGGA 40441 Score = 93.3 bits (102), Expect = 7e-15 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 |||||||| || ||||||||||| || || || |||||||||||| | || || || ||| Sbjct 44406 AACATCCAGGGGATCACCAAGCCGGCCATTCGCCGTCTGGCTCGTAGAGGAGGCGTGAAG 44347 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 ||| |||| || | |||| || |||| | | || | || ||||||||| ||| Sbjct 44346 CGTATCTCCGGCCTCATCTACGAGGAGACCAGGGGAGTCCTCAAAATCTTCCTCGAGAAT 44287 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 || ||| || || | ||| || ||||||||| | ||||| || || | ||| Sbjct 44286 GTGATCAGAGACGCCGTGACCTACACTGAGCACGCTCGGAGGAAGACCGTGACTGCGATG 44227 Query 16643 GATATCGTCTATGC 16656 || ||||||| || Sbjct 44226 GACGTCGTCTACGC 44213 >seq33871 Length=87940 Score = 114 bits (126), Expect = 2e-21 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || || || ||||||||||| || || |||||||| || || Sbjct 61558 GCCAAGCGTCACAGGAAGGTC-CTCCGCGATAACATCCAGGGTATTACCAAGCCGGCGAT 61500 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | ||||| ||| | ||||| || |||||| || || | | || || |||| Sbjct 61499 CCGTAGGCTGGCCCGTAGAGGTGGCGTGAAGCGTATCAGCGGGCTCATATACGAGGAGAC 61440 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||||||||||||| || ||| || || ||||| | ||| ||||| Sbjct 61439 TCGCGGCGTTTTGAAGATCTTTCTGGAGAATGTGATTAGGGATGCCGTTACCTACACCGA 61380 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| | || ||||| ||||| | || || Sbjct 61379 GCACGCCCGCCGCAAGACGGTCACTGCCATGGACGTGGTGTATGCGCTGAAAAGGCAGGG 61320 Score = 86.0 bits (94), Expect = 1e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || || || ||||||||||| ||||| |||||||| || || Sbjct 64335 GCGAAGCGTCACAGGAAGGTC-CTCCGCGATAACATCCAGGGAATAACCAAGCCGGCGAT 64277 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | ||||| ||| | || || || |||||| || || | | || || |||| Sbjct 64276 CCGTAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGCGGGCTCATATACGAGGAGAC 64217 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||||||||||||| || Sbjct 64216 TCGCGGCGTTTTGAAGATCTTTCT 64193 >seq2246 Length=10515 Score = 100 bits (110), Expect = 4e-17 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||| ||||| ||||| | || |||||||| ||||| ||||||||| Sbjct 345 CGGGACAACATCCAAGGCATCACGAAGCCGGTCATTCGTCGTCTAGCTCGCCGTGGTGGA 404 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||| | |||| || | |||| || |||| || || || | ||||||||||| Sbjct 405 GTGAAGCATATCTCCGGCCTCATCTACGAGGAGACTCACGACGTCCTCAAGATCTTCCTT 464 Query 16577 AAGACCGTTATCC 16589 ||| ||| |||| Sbjct 465 GAGAACGTCATCC 477 >seq34175 Length=275725 Score = 95.1 bits (104), Expect = 2e-15 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || || || || |||||||| |||||||||||||| || || Sbjct 56124 GCCAAGCGTCACAGGAAGGTC-CTCCGCGACAACATCCAGGGAATCACCAAGCCCGCCAT 56066 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| | || || || |||||| |||| || | |||| || |||| Sbjct 56065 CCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 56006 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | |||||||||||| | | ||| || ||||| | ||| || || Sbjct 56005 CAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCGGTGACCTACACGGA 55946 Query 16612 GCACGC 16617 |||||| Sbjct 55945 GCACGC 55940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79004432638200