Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq34118 192 7e-44 seq33222 161 1e-34 seq34317 120 4e-22 seq30018 98.7 1e-15 seq33604 95.1 2e-14 >seq34118 Length=323312 Score = 192 bits (212), Expect = 7e-44 Identities = 225/304 (74%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 138288 GTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTG 138347 || ||| |||| ||||| | ||||| || ||||||||||||| || |||||||| Sbjct 7059 GTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTA 7000 Query 138348 GCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCC 138407 ||| | || || |||| | | | || |||| || || ||||| ||||| | |||| Sbjct 6999 GCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCA 6940 Query 138408 TTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGT 138467 |||||||||||||| || | ||| | | || ||| |||| || |||||||||||| Sbjct 6939 TTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGT 6880 Query 138468 GCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTT 138527 ||||| |||||||||||||| | |||||| || || ||||||| || || ||| Sbjct 6879 GCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTTT 6820 Query 138528 GAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAA 138587 | || |||||| |||||||| ||||||||| |||||||||||| | ||||| ||| Sbjct 6819 AAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCAA 6760 Query 138588 ATCT 138591 |||| Sbjct 6759 ATCT 6756 >seq33222 Length=111615 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138339 TTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACC 138398 |||||||| ||||| || || |||||| | | || |||| || || ||||| ||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 138399 CTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCT 138458 | ||||| |||||||||||||| || || ||| | | |||| | | |||| || || Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 138459 ATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTT 138518 |||||||||||||| ||||||||||||| | ||||||||| || ||||||| || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 138519 AAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTAC 138565 || ||| | || |||||| |||||||| |||||||||||||| Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34317 Length=297777 Score = 120 bits (132), Expect = 4e-22 Identities = 143/191 (75%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 136079 CATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTA 136138 |||||||| || |||| |||||||||||||||| |||||||||||||||||| || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 136139 CACTTTTTCCTTGCTGCTTGGCCTGT-----TGTCGGTATCTGGTTTGCTGCCCTGGGCG 136193 ||||| ||| | | |||||||||||| || ||||||||||| | || | | | Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAG--G 200345 Query 136194 TATC--TACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTC 136251 |||| | ||||| |||||||| || || ||||| |||||||| ||| | || | Sbjct 200346 TATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAG 200405 Query 136252 TGAAGGTCGTG 136262 | ||||||||| Sbjct 200406 TCAAGGTCGTG 200416 >seq30018 Length=17342 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 135834 ATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAAC 135893 |||||||||| | | || | ||||||| || | |||| |||| | |||||| || | Sbjct 7164 ATGGTATGCCTTTAAAAAATTTTAGAACTTTCAATTTCATGATTGTATCCCAGGCCGAGC 7223 Query 135894 ACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTC 135953 |||||| ||| | ||| || || || ||||| || || ||||| || |||| ||| |||| Sbjct 7224 ACAACACTCTTACGCACCCATTTCATATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTC 7283 Query 135954 TGTTCTCTGCTATGCATGGATC 135975 | || | |||||||||||| || Sbjct 7284 TATTATGTGCTATGCATGGTTC 7305 >seq33604 Length=95044 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 135734 CTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCT 135793 ||||||||||||||||||||| ||| || |||||||| |||||||| |||||||| || Sbjct 23264 CTGGGTATGCGCCCTTGGATTGTTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCA 23323 Query 135794 GTTTTCCTGGTCTACCC 135810 |||||| || ||||||| Sbjct 23324 GTTTTCTTGATCTACCC 23340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627360440960000