Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq34317 95.1 2e-14 seq30018 95.1 2e-14 >seq34317 Length=297777 Score = 95.1 bits (104), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 212274 ACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTT 212333 |||||| || || ||| | | |||||||| ||||| ||||||||| | || Sbjct 200228 ACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTT 200287 Query 212334 ACACTTCTTCCTCGCATCATGGCCTGT--TA---TCTGTGTATGGTTAACCTCTATGGGT 212388 |||||||||| | | | |||||||| || | || | ||||| || || | ||| Sbjct 200288 ACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCACG-CTTTAGGT 200346 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 ||| ||| ||||||||||||||||| || ||||| ||||||||||| || |||||| Sbjct 200347 ATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGAT 200403 >seq30018 Length=17342 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 |||||||||||| | | |||| ||||| |||||| | |||| ||| || || || Sbjct 7166 GGTATGCCTTTAAAAAATTTTAGAACTTTCAATTTCATGATTGTATCCCAGGCCGAGCAC 7225 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 |||| |||| ||||||||| |||||| |||||| || ||| | |||| ||| | || Sbjct 7226 AACACTCTTACGCACCCATTTCATATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTCTA 7285 Query 212152 TTCTCTGCTATGCACGGTTC 212171 || | ||||||||| ||||| Sbjct 7286 TTATGTGCTATGCATGGTTC 7305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806773890344000