Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq34317 120 3e-22 seq34118 93.3 5e-14 >seq34317 Length=297777 Score = 120 bits (132), Expect = 3e-22 Identities = 133/176 (76%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 171371 CATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTA 171430 ||||| || || ||| ||| |||||||| ||||| ||||||||||||||||| ||| Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 171431 CACTTCTTCCTCGCTGTATTCCCTGTA-----GTCTGTGTATGGTTAACCTCTATGGGTA 171485 ||||||||| | | || | |||||| || || | ||||| | | || | |||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 171486 TCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 171541 || | | |||||||||||||| ||||| ||||| ||||||||||| || || ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGAT 200403 >seq34118 Length=323312 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 172227 ATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATC 172286 || ||||| |||||||| | |||||||||| || ||| |||||||| ||| | || Sbjct 7050 ATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAACTATA 6991 Query 172287 TTTCGTTATAT----TTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCA 172342 ||||| | || ||| |||| |||||||| | ||| || | | |||||||| Sbjct 6990 TTTCGATCCATCCTCTTTTTTCA---AGGGTTTC-ATAATTGGACATTGTACCCATTTCA 6935 Query 172343 TATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAAC 172402 ||||||||| || | ||| || | || || || ||||| || || |||||||| || Sbjct 6934 TATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGTGCTAC 6875 Query 172403 AGTACAGAACACATTGTATGAAGAC 172427 ||| | || || || | ||||||| Sbjct 6874 CGTAGAAAATACTTTATTTGAAGAC 6850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569717064936000