Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq33488 120 4e-22 >seq33488 Length=63435 Score = 120 bits (132), Expect = 4e-22 Identities = 259/388 (67%), Gaps = 17/388 (4%) Strand=Plus/Plus Query 33491 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33550 ||||| | | |||||| |||| |||||||| | ||||| || ||| || || | Sbjct 35333 GAGCCGAGTTGGCCTTGTTTTCCACACAAGGTAGGGTTTCAATTGCACGGAACAGTCTAT 35392 Query 33551 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA- 33609 | || |||| ||||| | |||| || | ||| || || ||||| || || || Sbjct 35393 TCTTCTCATCGGAGTCTTTGATGTAAGACTCTAGCAAGAGGCTGTACATCTCGGATGGAG 35452 Query 33610 ---ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666 ||||| || ||||| || || || |||||||| | |||||||| | ||| || Sbjct 35453 TGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAACGCACGAGCCTCGGAGACCTGGACC 35512 Query 33667 TCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 ||| | || | | | | ||| || || |||||| ||| ||||| || Sbjct 35513 TCTTTC----ATAGGTTCTCTAAA---------ACAATGCCGTCAGAGGCGGCAAAGAAA 35559 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 33786 || | || || || || || | ||| ||||| || || || ||| ||| | ||||| Sbjct 35560 GCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGGGTATCCCAGTGATTGAGG 35619 Query 33787 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATG 33846 || | ||| | ||| |||||||| | ||||| || || ||||| || || || ||||| Sbjct 35620 TCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 35679 Query 33847 TTCCAGATGTCATAATATTGGATTGGGA 33874 | ||| || ||| ||||||||||||| Sbjct 35680 TCCCAAATCTCAGGGTATTGGATTGGGA 35707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622344498584000