Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq34042 95.1 1e-14 seq33784 91.5 1e-13 seq34240 82.4 7e-11 >seq34042 Length=367129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | ||||| || || | || || || |||||||| |||| | ||||| Sbjct 85946 AAAATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACGATCACCCTCGAGGTTGAATCG 85887 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | || || |||||| ||||| ||||| || || || || Sbjct 85886 TCGGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATCCCGCCGGAC 85827 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | || |||||| || ||||| || | | | | || |||||| Sbjct 85826 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTAC 85767 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| |||| || ||||| Sbjct 85766 AACATCCAGAAGGAGTCCACTCTCCACCTCGTCCT 85732 >seq33784 Length=161669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 ||||| | ||||| || || |||||||| || | ||||| | ||| | || | | | Sbjct 105201 ATGCAGATCTTTGTCAAGACCTTAACTGGGAAGACCATCACATTGGAAGTGGAGAGCTCA 105260 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || | || ||| ||||||| ||||| ||||| || ||||| || || Sbjct 105261 -GATACAATTGACAATGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCA 105319 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTAT 26945 || |||| |||| | ||||| || ||||| |||| || | || | || ||||| Sbjct 105320 GCAGCGACTGATTTTTGCTGGCAAGCAGCTCGATGATGGGAGGACACTT--GCAGACTAC 105377 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| || || || ||||| | || ||| |||| || ||||| Sbjct 105378 AACATTCAAAAGGAGTCAACACTCCATTTAGTGCTGCGACTGAGGGGAGG 105427 >seq34240 Length=378565 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| || || || ||||| || ||||| |||| | |||||||| | ||| Sbjct 153677 GACAAAGAAGGTATCCCCCCTGATCAGCAGAGACTGATTTTTGCTGGCAAACAGTTGGAA 153618 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| || | | || || ||||| || || ||||| || | || ||||| || Sbjct 153617 GATGGAAGGACTCTGGCTGATTACAACATCCAGAAGGAATCAACACTTCACCTGGTTTTG 153558 Query 26982 AGACTTAGAGGAGGAAAAATATGATTA 27008 |||||||| ||||| || |||||||| Sbjct 153557 AGACTTAGGGGAGG--AACTATGATTA 153533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478199294128000