Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq34321 104 6e-17 seq34050 104 6e-17 seq33140 104 6e-17 seq33599 95.1 3e-14 seq34368 91.5 4e-13 seq33753 86.0 2e-11 >seq34321 Length=180555 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| |||||||| | ||| || || ||| | |||||| | ||| | Sbjct 112542 ATGAAAGATGATAGCATTGAGGGTATATATGATACTCTAAAGGAGTGTGCTGTAATTAGC 112483 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 ||| || || ||||||||||| || | || || | ||||| || | |||||||| Sbjct 112482 AAGTCAGCGGGTGGAATTGGTGTCTCTGTGCATAACATCCGTGCTACTGGG-AGTTACAT 112424 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || ||||| | ||||| ||||| |||||||| | | || Sbjct 112423 TCGTGGGACAAATGGAACATCCAATGGAATTGTTCCAATGCTACGTGTGTTCAATGACAC 112364 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| || || || |||||||| || || || | ||||| Sbjct 112363 TGCAAGATATGTTGACCAGGGAGGTGGCAAAAGAAAAGG 112325 >seq34050 Length=239353 Score = 104 bits (114), Expect = 6e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 |||||||| || ||| | | || |||||| ||||| || || ||||| ||||| Sbjct 39420 TCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGT 39479 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 |||||||| || || ||||| ||||| || | | |||||||| || | || || ||| Sbjct 39480 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTATCCTTCTCGAAT 39539 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGG 22656 ||||| || ||||||||||| | || |||||||||||| ||||| ||| || Sbjct 39540 GAGTTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTTGCGTGCATGCTCTATGGG 39596 >seq33140 Length=116131 Score = 104 bits (114), Expect = 6e-17 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | ||||| || ||| ||| || || || | ||| || || ||| | Sbjct 77613 TGCTTTCTTATCTGCATGAAAGAGGATAGCATTGATGGCATATATGATACTCTCAAGGAG 77554 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||| | ||| ||| ||||| ||||||||||| || | |||||| | ||||| Sbjct 77553 TGTGCTGTAATTAGCAAATCAGCAGGAGGAATTGGTGTTTCTGTGCACAATATCCGTGCT 77494 Query 363726 ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | ||||| ||||| || || | |||| | || ||||| | ||||| ||||| | Sbjct 77493 ACTG-GGAGTTATATTCGTGGAACAAATGGGACA-TCCAATGGAATTGTTCCTATGCTAC 77436 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||||||| | ||||||| | || || |||||||| || || || | ||||| Sbjct 77435 GTGTGTTCAATGATACTGCACGATATGTTGACCAGGGGGGTGGCAAAAGAAAAGG 77381 >seq33599 Length=161954 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 |||||||| || ||| | | || || ||| ||||| || || ||||| ||||| Sbjct 157600 TCATTCGCTGAGCGTTTGTTGGCCTTCGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGT 157659 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 |||||||| || || ||||| ||||| || | | |||||||| | | || || ||| Sbjct 157660 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTGTCCTTCTCGAAT 157719 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGG 22656 ||||| || ||||||||||| | || |||||||||||| ||||| ||| || Sbjct 157720 GAGTTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTTGCGTGCATGCTCTATGGG 157776 >seq34368 Length=429229 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | || || |||||||||||||| || || |||||||| || Sbjct 371785 CAGTTTTATGTAGCCAATGGTGAACTATCATGCCAAATGTACCAACGCTCTGCTGACATG 371726 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 |||||||| || |||||||| |||||| |||| | || || || ||| | || || ||| Sbjct 371725 GGTCTTGGAGTGCCGTTTAACATTGCATCTTACTCCCTTCTGACATGCATGATTGCCCAT 371666 Query 111822 TTT 111824 || Sbjct 371665 GTT 371663 >seq33753 Length=114126 Score = 86.0 bits (94), Expect = 2e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 |||||||| || ||| | | || |||||| ||||| || || |||| ||||| Sbjct 59581 TCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCATCTTCTCTGGGAGT 59640 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 |||||||| || || ||||| ||||| || | | ||||||| | | || || ||| Sbjct 59641 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGAGTTGTCCTTCTCGAAT 59700 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGG 22656 ||||| || ||||||||||| | || ||||||||| || ||||| ||| || Sbjct 59701 GAGTTGATCTCGCGAGATGAGGGGTTGCACTGCGATTTTGCTTGCATGCTCTATGGG 59757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302061080526800