Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq34423 116 3e-21 seq33784 114 1e-20 seq34050 113 4e-20 seq34042 82.4 7e-11 seq33279 82.4 7e-11 >seq34423 Length=256361 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||||||||| | || ||| |||| || ||| | | Sbjct 118947 ATGCAAATCTTCGTCAAAACCCTAACTGGAAAGACCATCACCCTCGAGGTGGAGAGCTCC 118888 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| ||||| || || || || || || || Sbjct 118887 GACACCATTGACAACGTCAAAGCTAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAG 118828 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| || || ||||| || | | | | | || |||||| ||| Sbjct 118827 CAGAGGCTGATCTTCGCCGGAAAACAGCTCGAGGACGGCCGCACCCTCGCCGATTACAAC 118768 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | ||| | | ||||||||||| Sbjct 118767 ATCCAGAAGGAATCCACTCTCCATCTCGTGCTCCGTTTGAGAGGAGG 118721 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| | || ||| |||| || ||| | Sbjct 119175 ATGCAGATCTTCGTCAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTGGAGAGTTCC 119116 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| ||||| || || || || || Sbjct 119115 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCGGACCAG 119056 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| || || ||||| || | | | | | || ||| || ||| Sbjct 119055 CAGAGGCTGATCTTCGCCGGAAAACAGCTCGAGGACGGCCGTACCCTCGCCGACTACAAC 118996 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | ||| | | ||||||||||| Sbjct 118995 ATCCAGAAGGAATCCACCCTCCATCTCGTGCTCCGTTTGAGAGGAGG 118949 >seq33784 Length=161669 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || |||||||| || | || || | ||||| ||| | Sbjct 105201 ATGCAGATCTTTGTCAAGACCTTAACTGGGAAGACCATCACATTGGAAGTGGAGAGCTCA 105260 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| ||||||| ||||| |||||||| ||||| || || Sbjct 105261 GATACAATTGACAATGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAG 105320 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 ||| ||||||||| | |||||||| ||||| |||| || | || | || || || | Sbjct 105321 CAGCGACTGATTTTTGCTGGCAAGCAGCTCGATGATGGGAGGACACTT--GCAGACTACA 105378 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||| || || ||| | ||||||||| | || |||| ||||| Sbjct 105379 ACATTCAAAAGGAGTCAACACTCCATTTAGTGCTGCGACTGAGGGGAGG 105427 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | || || | || || ||| Sbjct 105429 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACTCTTGAGGTGGAGAGTTCT 105488 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| ||||||| ||||| |||||||| || || ||||| Sbjct 105489 GATACTATTGATAATGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 105548 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 ||| ||||||||| | |||||||| ||||| |||| || | || | || || || | Sbjct 105549 CAGCGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACACTT--GCAGACTACA 105606 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||| || || ||| | ||||| ||| | | |||| ||||| Sbjct 105607 ACATTCAAAAGGAGTCAACACTCCATTTGGTGCTGCGTCTGAGGGGAGG 105655 >seq34050 Length=239353 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || || | ||||| |||| |||||| | | Sbjct 45018 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAGACTATTACTCTCGAGGTCGAGAGCTCC 44959 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| || || || ||||| || || || || Sbjct 44958 GACACCATCGACAATGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCGGACCAG 44899 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| ||||||||||| || | | | | || |||||| || Sbjct 44898 CAGAGGCTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGTACCCTCGCCGATTACAAT 44839 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || ||||||| || | ||||||| ||||| Sbjct 44838 ATCCAGAAGGAGTCCACCCTTCATTTGGTTCTCCGATTGAGGGGAGG 44792 >seq34042 Length=367129 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || || | || || || |||| ||| |||| || || | Sbjct 85946 AAAATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACGATCACCCTCGAGGTTGAATCG 85887 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | || || |||||| ||||| |||||||| || || || Sbjct 85886 TCGGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATCCCGCCGGAC 85827 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || ||||||||| ||||| || | | | | | || ||| || Sbjct 85826 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTAC 85767 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 85766 AACATCCAGAAGGAGTCCAC 85747 >seq33279 Length=59633 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || || | || || |||| |||||| | Sbjct 13141 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGTTCC 13082 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| || || || || || || || Sbjct 13081 GACACCATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 13022 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | || ||| ||||| |||||||| | | | | | || |||||| ||| Sbjct 13021 CAAAGGCTGATCTTCGCCGGGAAGCAGCTCGAAGACGGCCGTACCCTCGCCGATTACAAC 12962 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | || || ||| Sbjct 12961 ATCCAGAAGGAGTCAACCCTCCACTTGGTG 12932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429530435997000