Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq34050 120 2e-22 seq33714 104 2e-17 seq33157 104 2e-17 seq34042 100 2e-16 seq34423 96.9 3e-15 seq33784 95.1 1e-14 >seq34050 Length=239353 Score = 120 bits (132), Expect = 2e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 ||||| || |||| || || ||||||||||| || |||||||||||||| | || | Sbjct 44117 AGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCAAGAGTACGG 44176 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | ||||| | || ||||| ||| | || |||| ||||||||| ||| | ||| || Sbjct 44177 CCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCAGGAGGGATGCCTTCC 44236 Query 16838 TTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||||| || | | |||||| | | | | ||| ||| | ||| |||| |||| Sbjct 44237 TTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTATCGGAGCTTTCCACCTCCAGGGTG 44296 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||||| ||||| || || || || |||||||||||| Sbjct 44297 ATGGTTTTCCCGGTGAGAGTCTTCACGAAAATCTGCATT 44335 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || |||||||| |||| ||| || ||||| ||||| || || ||||||||||| Sbjct 44336 CCTCCACGGAGCCTCAGCACCAAATGAAGGGTGGATTCCTTCTGAATATTGTAGTCGGCT 44395 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | ||||||| | || || || || | ||||||| ||| ||||| || Sbjct 44396 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGG 44455 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | | ||||| | || Sbjct 44456 ATTCCCTCCTTGTCTTGGATCTTAGC--CTTCACGTTGTCTATGGTGTCAGAGCTTTCAA 44513 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || || || ||||| || ||||| || || |||||||| Sbjct 44514 CCTCCAAGGTAATAGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCAT 44562 >seq33714 Length=161502 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||| ||||| |||||||| || ||||||||||| || | || | | || Sbjct 23068 CAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCTCCCATC 23009 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| ||||| || ||| | || | ||||||||||| ||| | ||| || ||||| Sbjct 23008 ATCCAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTC 22949 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| |||||| | | | | || || ||| |||| ||||||| Sbjct 22948 TTGGATCTTTGC--CTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAGGGTGATG 22891 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || |||||||||||||| |||||||| Sbjct 22890 GTCTTCCCAGTTAGCGTTTTGACAAAGATCTGCAT 22856 >seq33157 Length=145522 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||| || || ||||||||||| |||| ||| | ||||| Sbjct 122113 AGCACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGGCCGTCC 122054 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || || | || |||||||| ||||| || | ||||| ||||| Sbjct 122053 TCCAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCT 121994 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| | |||||| | | | | |||||| || |||| |||| ||| || || Sbjct 121993 TGAATTTTCGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAGGGTTATCGTC 121934 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || || ||||| || || |||||||| || Sbjct 121933 TTCCCCGTGAGGGTTTTCACGAAGATCTGCATCTT 121899 >seq34042 Length=367129 Score = 100 bits (110), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | ||||||| | || Sbjct 85741 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 85800 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || |||||||| |||||| || | ||| || ||||| || ||| Sbjct 85801 TTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTT 85860 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | ||||| | || || | |||||| || || || | Sbjct 85861 GC--CTTCACATTGTCGATGGTGTCCGACGATTCAACCTCGAGGGTGATCGTCTTCCCCG 85918 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| || || ||||| ||||||||||| Sbjct 85919 TCAGGGTCTTCACAAAGATCTGCATTTT 85946 >seq34423 Length=256361 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| ||||| || |||||||||||||| | ||| | ||||| Sbjct 118964 AGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCC 119023 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || |||| ||| |||||| || | || || ||||| Sbjct 119024 TCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCT 119083 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| |||| || | |||||||| Sbjct 119084 TGGATCTTGGC--CTTGACGTTGTCAATGGTGTCGGAACTCTCCACCTCGAGGGTGATGG 119141 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||| || |||||||| || |||||||| Sbjct 119142 TCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 119175 >seq33784 Length=161669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | ||| || | ||| || || ||||||||||| ||||||||||| || Sbjct 105428 CCCTCCCCTCAGTCGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGC 105369 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || || | || ||||| ||| |||| || ||||| ||||| ||| Sbjct 105368 AAGTGTCCTCCCATCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGG 105309 Query 16828 CACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || |||||| || || | | | | || || | |||| Sbjct 105308 AATGCCTTCCTTGTCCTGAATCTTTGCT--TTAACATTGTCAATTGTATCTGAGCTCTCC 105251 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||| || || || | || |||||||| |||||||| Sbjct 105250 ACTTCCAATGTGATGGTCTTCCCAGTTAAGGTCTTGACAAAGATCTGCAT 105201 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | ||| |||| ||| || || ||||||||||| ||||||||||| || Sbjct 105656 CCCTCCCCTCAGACGCAGCACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGC 105597 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | ||||| | || ||||| ||| |||| || ||||| || || || Sbjct 105596 AAGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGG 105537 Query 16828 CACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || |||||| || || | | | ||| || |||| Sbjct 105536 AATGCCTTCCTTGTCCTGAATCTTTGCT--TTAACATTATCAATAGTATCAGAACTCTCC 105479 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || |||| || |||||||| |||||||| Sbjct 105478 ACCTCAAGAGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 105429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404705875426000