Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq33488 129 7e-25 seq34321 89.7 7e-13 >seq33488 Length=63435 Score = 129 bits (142), Expect = 7e-25 Identities = 264/387 (68%), Gaps = 19/387 (5%) Strand=Plus/Plus Query 32848 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 32907 ||||| | | |||||| |||| |||||||| | || || || ||| || || | Sbjct 35333 GAGCCGAGTTGGCCTTGTTTTCCACACAAGGTAGGGTTTCAATTGCACGGAACAGTCTAT 35392 Query 32908 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA- 32966 | || |||| ||||| | || | || | ||| || || ||||| || || || Sbjct 35393 TCTTCTCATCGGAGTCTTTGATGTAAGACTCTAGCAAGAGGCTGTACATCTCGGATGGAG 35452 Query 32967 ---ATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCTGTAC 33022 ||||| || ||||| ||||| || |||||||| ||| | |||||||| | ||| || Sbjct 35453 TGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAACGCA-CGAGCCTCGGAGACCTGGAC 35511 Query 33023 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33082 ||| | || | ||||| ||||| || || |||||| ||| ||||| || Sbjct 35512 CTCTTT-CATAG--GTTCT-CTAAA---------ACAATGCCGTCAGAGGCGGCAAAGAA 35558 Query 33083 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 33142 || | || || || || || | ||| ||||| || || || ||| ||| | ||||| Sbjct 35559 AGCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGGGTATCCCAGTGATTGAG 35618 Query 33143 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202 || | ||| | |||||||||||| | ||||| || || ||||| || || || ||||| Sbjct 35619 GTCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCCTCGGCTTTCTTGTACAT 35678 Query 33203 ATTCCAGATGTCATGATATTGAATTGG 33229 | ||| || ||| | ||||| ||||| Sbjct 35679 CTCCCAAATCTCAGGGTATTGGATTGG 35705 >seq34321 Length=180555 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 |||||||| || | ||||| || |||| ||| | || | | |||||||| ||| ||| Sbjct 112340 CCTCCCTGGTCAACATATCTTGCAGTGTCATTGAACACACGTAGCATTGGAACAATTCCA 112399 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| ||||| || || || ||| | ||||| || ||| | || Sbjct 112400 TTGGATGTTCCATTTGTCCCACGAATGTAACTCCCAGTAGCACGGATGTTATGCACAGAG 112459 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || || |||| || || |||| |||||||| || Sbjct 112460 ACACCAATTCCACCCGCTGACTTGCTAATTACAGCACACTCCTTTAGAGTATCATATATA 112519 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || |||||||| ||||| | || || |||||| Sbjct 112520 CCCTCAATGCTATCATCTTTCATGCAGATAAGGAAGCAGCTA 112561 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || |||||||| | || |||||||| ||||| |||||| || ||| | | || Sbjct 112755 AGTGCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCGTTGAGACATCAAATG 112814 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || ||| || || || || ||||| | ||||| || || | || | ||| || Sbjct 112815 ATATGTCCTGATGGCAGATTCAATATCATTCTTGTGAATCCCAACAGAAACTCTCATCAA 112874 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| || || ||||| || | || | | ||||| | ||| || |||| | Sbjct 112875 CATGTGTTGTGGCCTTTCCACAACTTTTCCCTGAACCTTCAAGAGGTAAGACCTTTCAAG 112934 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| ||||||||||| | || ||||||||| || || || || Sbjct 112935 GGTTTTGAAACCAAAATAATCATAATCAAAGTCTCGGTCATATATGAT 112982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633018961040000