Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq34118 183 3e-41 seq34317 152 6e-32 seq33222 131 2e-25 seq33604 82.4 9e-11 >seq34118 Length=323312 Score = 183 bits (202), Expect = 3e-41 Identities = 227/311 (73%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 167714 TTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCG 167773 ||||| ||||| || | || ||||| || || ||||| ||||||||||||| || Sbjct 7068 TTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGT 7009 Query 167774 TTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACG 167833 |||||||| ||| | |||||| ||| | | || || | || || || ||||| ||||| Sbjct 7008 TTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACA 6949 Query 167834 CTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCA 167893 | |||| || |||||||||||||||| ||| | | ||| ||| ||||| | || Sbjct 6948 TTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCT 6889 Query 167894 ATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTC 167953 || ||||||| ||| ||||| |||||| | | |||||| ||||| ||||| || ||| Sbjct 6888 ATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTC 6829 Query 167954 AAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTC 168013 || ||| | | ||||| || ||||||||||| ||| | |||||||||| || Sbjct 6828 TGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTT 6769 Query 168014 TGGTCTCAAAT 168024 ||||| ||||| Sbjct 6768 TGGTCCCAAAT 6758 >seq34317 Length=297777 Score = 152 bits (168), Expect = 6e-32 Identities = 148/189 (78%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 166759 CATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTG 166818 |||||||| || |||| ||||||||||||| ||| |||||||||||||| ||| | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 166819 CACTTCTTCCTCGCAGCATGGCCTGT-----TGTCGGTATCTGGTTTACTGCTCTTGGTG 166873 ||||||||| | | || |||||||| || ||||||||||| || ||| | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGTA 200347 Query 166874 TTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTC 166933 | |||| |||||||||||||| ||||||||||| |||||||| ||| | | ||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 166934 AGGGTCGTG 166942 | ||||||| Sbjct 200408 AAGGTCGTG 200416 >seq33222 Length=111615 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 167774 TTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACG 167833 |||||||| ||||| |||||| ||||| | | || | || || || ||||| ||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 167834 CTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCA 167893 | ||||| || ||||||||||||||||| ||| | | || | | | ||||| | | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 167894 ATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTC 167953 || ||||||| ||| |||| |||||| | | |||||||||||| ||||| || ||| Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 167954 AAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCAC 168000 || ||| | | ||||| || ||||||||||| ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq33604 Length=95044 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 166414 CTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCA 166473 || |||||||| ||||||||| || |||||||| || ||||||||||| || ||||| Sbjct 23264 CTGGGTATGCGCCCTTGGATTGTTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCA 23323 Query 166474 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 166513 || ||| || |||| || ||||||| || ||| |||| Sbjct 23324 GTTTTCTTGATCTACCCAATCGGTCAGGGAAGTTTTTCTG 23363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566683203040000