Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq31896 96.9 4e-15 seq34154 89.7 6e-13 seq34090 87.8 2e-12 seq33002 87.8 2e-12 seq31168 87.8 2e-12 seq77336 86.0 7e-12 seq33902 86.0 7e-12 seq33835 86.0 7e-12 seq33791 86.0 7e-12 seq33571 86.0 7e-12 seq31719 86.0 7e-12 seq29439 86.0 7e-12 seq34329 84.2 2e-11 seq34147 84.2 2e-11 seq76675 82.4 8e-11 seq63330 82.4 8e-11 seq34366 82.4 8e-11 seq34101 82.4 8e-11 seq33921 82.4 8e-11 seq33498 82.4 8e-11 seq33438 82.4 8e-11 seq32787 82.4 8e-11 >seq31896 Length=65294 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/90 (84%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||||| | | || Sbjct 60459 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGA 60518 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||| || ||||| ||||||||| Sbjct 60519 GCGTGGGTTCAAATCCCACTTCTGACAAAT 60548 >seq34154 Length=110578 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/89 (83%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 38981 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGA 38924 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 38923 GGGCGTGGGTTCAAATCCCACTTCTGACA 38895 >seq34090 Length=245830 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 74394 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 74451 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||| || ||||| |||||| || Sbjct 74452 GCGTGGGTTCAAATCCCACTTCTGACATAT 74481 >seq33002 Length=56543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 49452 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTATGAGAGC 49511 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 49512 GTGGGTTCAAATCCCACTTCTGACA 49536 >seq31168 Length=79507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/95 (81%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 126257 CTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC 126316 |||| | ||||||| ||||||||||||||||||||||||||| ||| |||||| | || Sbjct 24265 CTATCAAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGATTCAAGTTCTGGT--CTTC 24208 Query 126317 GGGA----GCGTGGGTTCGAACCCCACACCTGACA 126347 | || |||||||||| || ||||| |||||| Sbjct 24207 GTGAGAGGGCGTGGGTTCAAATCCCACTTCTGACA 24173 >seq77336 Length=13597 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/93 (82%), Gaps = 8/93 (9%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 13254 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 13311 Query 126322 CGTGGGTTCGAACCCCACACCTGACA--AATTA 126352 ||||||||| || ||||| |||||| ||||| Sbjct 13312 CGTGGGTTCAAATCCCACTTCTGACATTAATTA 13344 >seq33902 Length=101214 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 69765 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 69822 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 69823 CGTGGGTTCAAATCCCACTTCTGACAA 69849 >seq33835 Length=235619 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/98 (81%), Gaps = 8/98 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 169608 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 169551 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||| || ||||| ||||| |||||| ||| Sbjct 169550 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTTG 169515 >seq33791 Length=143019 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/92 (82%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 103474 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAAG 103531 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||||| || ||||| |||||||| || Sbjct 103532 GCGTGGGTTCAAATCCCACTTCTGACAAAATA 103563 >seq33571 Length=51957 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/93 (82%), Gaps = 8/93 (9%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 12346 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 12289 Query 126322 CGTGGGTTCGAACCCCACACCTGACA--AATTA 126352 ||||||||| || ||||| |||||| ||||| Sbjct 12288 CGTGGGTTCAAATCCCACTTCTGACATTAATTA 12256 >seq31719 Length=127338 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 117747 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 117690 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 117689 CGTGGGTTCAAATCCCACTTCTGACAA 117663 >seq29439 Length=9024 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/92 (82%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1123 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAAG 1180 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||||| || ||||| ||||||| ||| Sbjct 1181 GCGTGGGTTCAAATCCCACTTCTGACAATTTA 1212 >seq34329 Length=261575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 93990 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 94047 Query 126328 TTCGAACCCCACACCTGACAAATTATTA 126355 ||| || |||||| ||| ||| || ||| Sbjct 94048 TTCAAATCCCACAGCTGTCAATTTTTTA 94075 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 101593 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 101536 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 101535 GGGTTCAAATCCCACAGCTGTCAATTT 101509 >seq34147 Length=306263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 8/102 (8%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 21220 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAAGG 21163 Query 126322 CGTGGGTTCGAACCCCACACCTGACA--AATTATTATTGGAA 126361 ||||||||| || ||||| |||||| ||| || |||||| Sbjct 21162 CGTGGGTTCAAATCCCACTTCTGACAATAATATTTTTTGGAA 21121 >seq76675 Length=3114 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| | |||| ||||| || | Sbjct 219 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTTTGGT--CCTCGTGAGAGGG 162 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 161 CGTGGGTTCAAATCCCACTTCTGACAA 135 >seq63330 Length=572 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| |||||||||||||||| |||||||| | ||| |||||| ||||| || | Sbjct 366 GTCAGGATGGCCGAGTGGTCTAATGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 309 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 308 CGTGGGTTCAAATCCCACTTCTGACAA 282 >seq34366 Length=179450 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 156703 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAAG 156646 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 156645 GCGTGGGTTCAAATCCCACTTCTGACA 156619 >seq34101 Length=120582 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/98 (80%), Gaps = 9/98 (9%) Strand=Plus/Minus Query 126257 CTATTTACA---GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCC 126313 ||||| ||| |||||| ||||||||||||||||||||||||| | ||| |||||| | Sbjct 57159 CTATTAACAAGTGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--C 57102 Query 126314 CTCGGGA----GCGTGGGTTCGAACCCCACACCTGACA 126347 ||| || |||||||||| || ||||| |||||| Sbjct 57101 TTCGTGAGAAGGCGTGGGTTCAAATCCCACTTCTGACA 57064 >seq33921 Length=200012 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 102650 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAAGG 102593 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 102592 CGTGGGTTCAAATCCCACTTCTGACAA 102566 >seq33498 Length=61666 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 34326 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 34383 Query 126325 GGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||| || |||||| ||| || |||| Sbjct 34384 GGGTTCAAATCCCACAGCTGTCATTTTAT 34412 >seq33438 Length=129878 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 86931 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGG 86988 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 86989 CGTGGGTTCAAATCCCACTTCTGACAA 87015 >seq32787 Length=99537 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||| ||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 4846 AGTTAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAAG 4789 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||||| || ||||| ||||||| ||| Sbjct 4788 GCGTGGGTTCAAATCCCACTTCTGACAACTTA 4757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556322037176000