Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq34050 116 3e-21 seq33714 113 4e-20 seq31522 104 2e-17 seq33279 102 7e-17 seq33784 89.7 4e-13 seq34423 84.2 2e-11 >seq34050 Length=239353 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| ||| | |||||| ||| ||||| || || ||| Sbjct 44138 GTGGACTCCTTCTGAATGTTGTAGTCGGCAAGAGTACGGCCATCCTCAAGCTGCTTGCCA 44197 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||||||||| ||||| |||||||| ||||| ||||| || Sbjct 44198 GCAAAGATGAGCCTCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTC 44257 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || |||| | ||| || |||| ||| | ||||| ||||| ||||| Sbjct 44258 ACGTTGTCAATAGTATCGGAGCTTTCCACCTCCAGGGTGATGGTTTTCCCGGTGAGAGTC 44317 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 44318 TTCACGAAAATCTGCAT 44334 >seq33714 Length=161502 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | ||||| || ||||| |||||||| || Sbjct 22110 ATACCACCACGCAGACGAAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCT 22051 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||||||||| || || ||||| | || || | ||||||||| ||| Sbjct 22050 GCAAGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTCTGTTGGTCAGGA 21991 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| |||| | |||| ||| || | | || Sbjct 21990 GGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 21931 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| || |||||||||||||| |||||||| Sbjct 21930 ACCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 21881 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | | || || || ||||| | |||||| || || ||||||||||| || Sbjct 23085 ATACCCCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCT 23026 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||| || || |||||||| || |||| | |||||||||||| ||| Sbjct 23025 GCAAGTGTCCTCCCATCATCCAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGA 22966 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| || | | |||| ||| || | || Sbjct 22965 GGAATGCCTTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCA 22906 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || || || || || ||||| ||||| ||||||||| Sbjct 22905 ACCTCCAGGGTGATGGTCTTCCCAGTTAGCGTTTTGACAAAGATCTGCATG 22855 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || |||||||| || ||||| || Sbjct 21882 ATACCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 21823 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| ||||| || || ||||| | || || | |||||| || ||| Sbjct 21822 GCAAGAGTGCGTCCATCGTCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGA 21763 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || |||||| |||| | |||| ||| || | | || Sbjct 21762 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 21703 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || |||||||||||||| |||||||| Sbjct 21702 ACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 21653 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | || || |||||||| ||||||||||| Sbjct 22857 ATGCCACCACGCAGGCGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAATCA 22798 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||||||| || || ||||| | || || | ||||| || ||| Sbjct 22797 GCAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAGCCTTTGTTGATCTGGA 22738 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || |||||| || | | |||| ||| || | | || Sbjct 22737 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCCGAGCTCTCA 22678 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| || |||||||| ||||| ||||||||| Sbjct 22677 ACTTCAAGAGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCATG 22627 >seq31522 Length=43835 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || | |||| ||| | ||| | ||| |||||||| || || ||||||||| Sbjct 29175 ATACCACCGCGCAACCTCAGAACCAGATGCAGCGTCGATTCTTTCTGGATATTGTAATCG 29116 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || |||||||| ||| | || | | ||| || || ||| Sbjct 29115 GCTAGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCTGGA 29056 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||| |||| ||| || || | | |||| || || | | ||| Sbjct 29055 GGAATTCCTTCTCTGTCCTGAATTTTCGCCTTCACGTTATCAATTGTATCTGAGCTTTCA 28996 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||| || ||||||||||| ||||| || ||||| Sbjct 28995 ACTTCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCAT 28946 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| | ||| | || ||||| || || || |||||||| Sbjct 35401 CCACCACGAAGACGGAGAACAAGATGGAGAGTTGATTCCTTCTGGATACTGTAATCGGCA 35342 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| || ||| ||||| ||||| || || | || | |||||||| || |||||| Sbjct 35341 AGAGTGCGCCCATCCTCAAGCTGTTTCCCTGCAAATATCAAGCGCTGTTGATCTGGAGGA 35282 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || |||||||| || |||||| || | | |||| || || | | ||| || Sbjct 35281 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTATCTGAGCTTTCAACT 35222 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | |||||| || ||||||||||| ||||| || ||||| Sbjct 35221 TCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCAT 35175 >seq33279 Length=59633 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || | || ||||| | ||||| || || |||||||||||||| Sbjct 12000 ATACCACCCCTCAGCCTGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCA 12059 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || || |||||| |||| || | ||| || || || Sbjct 12060 GCAAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGG 12119 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| || ||| || | | |||| ||||||| | ||| Sbjct 12120 GGAATTCCTTCTTTGTCCTGGATTTTTGCCTTCACGTTATCAATTGTGTCGGAGCTTTCC 12179 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | || |||||||| || || || ||||| ||||||||| || Sbjct 12180 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGCCT 12233 >seq33784 Length=161669 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||| || |||||||| | || || || |||||||||||||| || | || | Sbjct 105418 AGTCGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGTGTCCTC 105359 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || || || || ||||| | || || ||||| ||||| |||||||||||||| Sbjct 105358 CCATCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATGCCTTCC 105299 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||||||| ||| | | |||| || || | | || || |||| || Sbjct 105298 TTGTCCTGAATCTTTGCTTTAACATTGTCAATTGTATCTGAGCTCTCCACTTCCAATGTG 105239 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 | || || || || | || || ||||| ||||||||| || Sbjct 105238 ATGGTCTTCCCAGTTAAGGTCTTGACAAAGATCTGCATGCCT 105197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||||||| | || || || || ||||| ||||| || | || | | ||| ||| Sbjct 104636 ACTAAATGGAGTGTTGACTCCTTCTGAATATTGTAGTCTGCAAGTGTCCTACCATCCTCA 104577 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || || |||| || | ||| ||||| || ||||||||||| || || Sbjct 104576 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGG 104517 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| ||| | | |||| ||||| | | || || |||| || | || || Sbjct 104516 ATCTTTGCTTTAACGTTGTCAATTGTGTCTGAGCTCTCCACTTCCAATGTGATGGTCTTC 104457 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT-TAATTATTCCTTT 114399 || || || || |||||||| |||||||| || ||||||| | ||| Sbjct 104456 CCTGTGAGTGTCTTTACAAAGATCTGCAT--CTGTAATTATACATTT 104412 >seq34423 Length=256361 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||||||| | || || || || || ||||| || Sbjct 118751 GTGGATTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGTTTTCCG 118810 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| |||||||| || || || || ||||| |||||| ||| Sbjct 118811 GCGAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGAATCTTAGCTTTG 118870 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | || || || | ||| | || || || || || ||| Sbjct 118871 ACGTTGTCAATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCAGTTAGGGTT 118930 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || || |||||| || Sbjct 118931 TTGACGAAGATTTGCATGCCT 118951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419738081968800