Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq33599 127 4e-24 >seq33599 Length=161954 Score = 127 bits (140), Expect = 4e-24 Identities = 295/439 (67%), Gaps = 7/439 (2%) Strand=Plus/Plus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 || |||| ||||| || |||||||| |||||||| || ||||| || ||| ||| Sbjct 157331 ACGTACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTTGCCGGACGGT 157390 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATA 42536 ||||||| ||||| ||| |||||||| ||| || || || |||||||| ||||| Sbjct 157391 TCATGAAGGAGGTCCAGATTGCGGAGGCGCG-TGCGTTTTATGGATTCCAGATCGCCATC 157449 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 ||||| | ||||||||| ||||| ||| | | || |||||| |||| | | Sbjct 157450 GAGAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAA 157509 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 ||| | || ||||| | || || || || ||||||| | |||||||||| | Sbjct 157510 GAGAAGGATAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAG 157569 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| ||| ||||| || | | || || |||| ||| | || | ||||| Sbjct 157570 TGGGCTCTCCGTTGGATTGATGGCTCGGAATCA---TTCGCTGAGCGTTTGTTGGCCTTC 157626 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTC-GGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | || ||||| ||||||||||| ||| | || | | || |||||||| || | Sbjct 157627 GCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGTTTTTG-TGCTATATTCTGGCTGAAAAA 157685 Query 42776 GAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | | | |||||| || | |||||||||| || | ||| | || ||||| | Sbjct 157686 GCGCGGTTTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTT 157745 Query 42836 GCATAGGGACTTTGCCTGC 42854 ||| | || ||||| ||| Sbjct 157746 GCACTGCGATTTTGCGTGC 157764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943425551824000