Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq33784 98.7 8e-16 >seq33784 Length=161669 Score = 98.7 bits (108), Expect = 8e-16 Identities = 114/150 (76%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||||| ||| || || |||||| ||||||||||| ||||| Sbjct 105655 CCTCCCCTCAGACGCAGCACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGC- 105597 Query 33961 AATTGTCG-CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || |||| | | || || | |||||||| ||||| ||||| ||||||||||| || Sbjct 105596 AAGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGG 105537 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| | | | ||||||| Sbjct 105536 AATGCCTTCCTTGTCC-TGAATCTTTGCTT 105508 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/150 (75%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||| | ||| || || |||||| ||||||||||| |||| | Sbjct 105427 CCTCCCCTCAGTCGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTG-C 105369 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | | || || | |||||||| ||||| ||||| |||||||| || || Sbjct 105368 AAGTGTCCTCCCATCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGG 105309 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| | | | ||||||| Sbjct 105308 AATGCCTTCCTTGTCC-TGAATCTTTGCTT 105280 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||| | ||| || || |||||||||||| ||||| ||||| Sbjct 104654 CCTCCCCTCAGGCGCAGCACTAAATGGAGTGTTGACTCCTTCTGAATATTGTAGTCTGC- 104596 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || |||| || | || || | |||||||||||||| ||||| | |||||| || Sbjct 104595 AAGTGTC-CTACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTC 104542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396687846074800