Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq33599 125 9e-24 seq34050 111 2e-19 seq33753 105 8e-18 seq34345 98.7 1e-15 >seq33599 Length=161954 Score = 125 bits (138), Expect = 9e-24 Identities = 194/275 (71%), Gaps = 9/275 (3%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | ||||| || || ||||| | |||||||||||| ||| || Sbjct 157760 GCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCC 157701 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | ||| ||||| |||| |||||| || |||||||| || ||||||||||| Sbjct 157700 GGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGATC 157641 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAAC 126226 ||||| ||||| ||||| || || | ||||||||| || || ||| |||| | Sbjct 157640 CCCTCAACACAAGCGAAGGCCAACAAACGCTCAGCGAATGATTCCGA---GCCATCAATC 157584 Query 126227 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 126286 || | ||||||| ||||| ||||| | ||| || || || | ||||| | || Sbjct 157583 CAACGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAAC 157524 Query 126287 A---GTTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 | ||||||| ||| || ||| |||||||| Sbjct 157523 AACCTATCCTTCTCTTCAGA---ATCCTTGATGTA 157492 >seq34050 Length=239353 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | ||||| || || ||||| | |||||||||||| | | || Sbjct 39580 GCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGATAACCCC 39521 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | ||| ||||| |||| |||||| || |||||||| || ||||||||||| Sbjct 39520 GGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGATC 39461 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 ||||| ||||| || || || || | ||||||||| || || Sbjct 39460 CCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA 39420 >seq33753 Length=114126 Score = 105 bits (116), Expect = 8e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | ||||| || || ||||| | |||||||||||| ||| | Sbjct 59741 GCAAAATCGCAGTGCAACCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACTCC 59682 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | ||| ||||| |||| |||||| || |||||||| || ||||||| ||| Sbjct 59681 GGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGATGATC 59622 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 ||||| ||||| || || || || | ||||||||| || || Sbjct 59621 CCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA 59581 >seq34345 Length=307576 Score = 98.7 bits (108), Expect = 1e-15 Identities = 244/365 (67%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| ||||| || | | | ||| |||||| |||||| || || || || || Sbjct 56845 ATCAAACCGACCAGGCCTCAACAAGGCTGAGTCAAGAATATCAGCACGATTAGTGGCGGC 56786 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 || || | ||| || || | ||||| || ||||| || |||| |||||| || | Sbjct 56785 AATAACTATGATTCCGGTGTTTCCTTCAAAACCGTCCATTTCTGTCAGGAGTTGGTTTAG 56726 Query 10909 GGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGC 10968 |||||| || | || |||||| | | ||| | | | |||| || || || Sbjct 56725 GGTTTGCTCTCTCTCGTCATTCCCTCCGCCAATACCGGTTCCTCTTTGCCGCCCAACAGC 56666 Query 10969 GTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGATAT 11027 ||||||||||| | || || || || || ||||| ||| ||| ||| | | Sbjct 56665 ATCAATTTCATCAACAAATACAATGCAGGGAGCGTTTTCCTTGGCTTTCTTGAAA-AGGT 56607 Query 11028 CTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATT 11087 | ||||| | ||||||||||| |||||||| || ||||| | | | ||| || Sbjct 56606 CACGGACACGAGATGCACCGACACCAACAAACATCTCGACAAATTCTGAACCTGAA-ATC 56548 Query 11088 G-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 11146 | || ||| || || || |||||| || |||||| ||| || ||||||||||| || Sbjct 56547 GAGAAGAAAGGAACACCGGCTTCACCAGCTATGGCTTTGGCTAGTAGGGTCTTCCCGGTA 56488 Query 11147 CCAGG 11151 ||||| Sbjct 56487 CCAGG 56483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596775660392000