Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq34042 114 1e-20 seq34423 109 5e-19 seq33714 104 2e-17 seq33260 102 8e-17 seq34050 96.9 3e-15 seq33784 96.9 3e-15 seq33157 96.9 3e-15 >seq34042 Length=367129 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 85750 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 85809 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || ||||| ||||| ||| ||| || | | Sbjct 85810 AAGATGAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTCACA 85869 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||| || ||||||| || | ||| || || ||||| || || Sbjct 85870 TTG-TCGATGGTGTCCGACGATTCAACCTCGAGGGTGATCGTCTTCCCCGTCAGGGTCTT 85928 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 85929 CACAAAGATCTGCAT 85943 >seq34423 Length=256361 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| |||||| | || | ||| | | | || ||||| || |||||||||||| Sbjct 118948 GCCTCCTCTCAAACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 119007 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||||||| ||||| |||| |||| || | ||| |||||||| || Sbjct 119008 GAGGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGG 119067 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||||| |||||| Sbjct 119068 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAACTCTCCAC 119127 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || || || ||||| || || |||||||| Sbjct 119128 CTCGAGGGTGATGGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 119175 Score = 102 bits (112), Expect = 8e-17 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| |||||| | || | ||| | | || ||||| || |||||||| ||| Sbjct 118720 GCCTCCTCTCAAACGGAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 118779 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||||||| ||||| |||| |||| || | ||| |||||||| || Sbjct 118780 GAGGGTGCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGG 118839 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | ||| | |||| | | |||||||| |||| Sbjct 118840 GATTCCCTCCTTGTCC-TGAATCTTAGCTTTGACGTTGT-CAATGGTGTCGGAGCTCTCC 118897 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||||| || | || || ||||| || ||||| || || || |||||| || Sbjct 118898 ACCTCGAGGGTGATGGTCTTTCCAGTTAGGGTTTTGACGAAGATTTGCATGCCT 118951 >seq33714 Length=161502 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| || ||||| | | |||||||| |||||||||||||| Sbjct 23082 CCCCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCA 23023 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | || || || |||||||| | | |||| | |||||||||||| ||||| Sbjct 23022 AGTGTCCTCCCATCATCCAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGA 22963 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| ||| || | |||| || | ||| || | ||| || Sbjct 22962 ATGCCTTCCTTGTCTTGGATCTTTGCCTTCACATTG-TCAATGGTATCTGAACTCTCAAC 22904 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || ||||| || ||||| ||||| ||||||||| Sbjct 22903 CTCCAGGGTGATGGTCTTCCCAGTTAGCGTTTTGACAAAGATCTGCATG 22855 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | || | | | ||||||||||| ||||||||||| Sbjct 22107 CCACCACGCAGACGAAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCA 22048 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || || || | | | || || | ||||||||| ||||| Sbjct 22047 AGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTCTGTTGGTCAGGAGGA 21988 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || |||||||| || ||| | || | ||| |||| || | ||| || | ||| | Sbjct 21987 ATTCCTTCTTTATC-TTGAATCTTAGCCTTTACATTG-TCAATGGTATCTGAGCTCTCAA 21930 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| |||||||||||||| |||||||| Sbjct 21929 CCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 21881 >seq33260 Length=58559 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| | || ||| ||||||||| || || |||| Sbjct 34006 GACTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCG 34065 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 34066 AAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACA 34125 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||||||||| | || | ||| || || ||||| || || Sbjct 34126 TTG-TCAATGGTGTCCGATGACTCCACCTCTAGGGTTATCGTCTTCCCCGTCAGGGTCTT 34184 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 34185 CACGAAGATCTGCAT 34199 >seq34050 Length=239353 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| || | ||| ||||| | | | |||||||| || || ||||| ||| Sbjct 44792 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 44851 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||||||| || |||| |||| || | ||| |||||||| || Sbjct 44852 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 44911 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || || || ||| | || | || |||| || | |||||||| ||| | Sbjct 44912 ATGCCCTCCTTATC-TTGAATCTTGGCCTTGACATTG-TCGATGGTGTCGGAGCTCTCGA 44969 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || || || ||||| ||||| |||||||| Sbjct 44970 CCTCGAGAGTAATAGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 45018 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | |||||| ||||| || || || || | | Sbjct 44141 GACTCCTTCTGAATGTTGTAGTCGGCAAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCA 44200 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||||||||| ||||| || ||||| ||||| ||| || || | Sbjct 44201 AAGATGAGCCTCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCACG 44260 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || |||| |||||||| | || | ||||| || || ||||| || Sbjct 44261 TTGTCAATAGTATCGGAGCTTTCCACCTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTC 44320 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 44321 ACGAAAATCTGCAT 44334 >seq33784 Length=161669 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| |||||||| | ||||||||||||||||||||||||| | || | | Sbjct 105415 CGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGTGTCCTCCCA 105356 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || ||||| || || || | | | || || ||||| ||||| ||||| || ||||| ||| Sbjct 105355 TCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATGCCTTCCTTG 105296 Query 138520 TCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 || ||| | |||| |||| |||| || | || || | |||||| || | || | Sbjct 105295 TC-CTGAATCTTTGCTTTAACATTG-TCAATTGTATCTGAGCTCTCCACTTCCAATGTGA 105238 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || || ||||| | || || ||||| ||||||||| || Sbjct 105237 TGGTCTTCCCAGTTAAGGTCTTGACAAAGATCTGCATGCCT 105197 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||||| || ||||| | ||||||||||||||||||||||||| Sbjct 105655 CCTCCCCTCAGACGCAGCACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCA 105596 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | |||||||| || || || | | | || || ||||| || || || || Sbjct 105595 AGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGA 105536 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| ||||| | || | || || | |||||| Sbjct 105535 ATGCCTTCCTTGTC-CTGAATCTTTGCTTTAACATTATCAATAGTATCAGAACTCTCCAC 105477 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| || || ||||| |||||||| Sbjct 105476 CTCAAGAGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 105429 >seq33157 Length=145522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || || |||||| || || || |||| Sbjct 122095 GACTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGGCCGTCCTCCAGCTGCTTTCCGGCG 122036 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| || || || || || ||||| ||| |||| | || | Sbjct 122035 AAGATGAGCCGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCT-TGAATTTTCGCCTTCAC 121977 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | |||||||| ||||||||||| | || | ||| || || || || |||| Sbjct 121976 ATTGT-CGATGGTGTCGGAGGACTCCACCTCCAGGGTTATCGTCTTCCCCGTGAGGGTTT 121918 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 121917 TCACGAAGATCTGCAT 121902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495782266128000