Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq31522 109 4e-19 seq33714 98.7 7e-16 seq33784 87.8 1e-12 seq34050 84.2 2e-11 >seq31522 Length=43835 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| || | ||| | ||| || || || ||||| || || ||||||||| Sbjct 29172 CCACCGCGCAACCTCAGAACCAGATGCAGCGTCGATTCTTTCTGGATATTGTAATCGGCT 29113 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | ||||| || ||| | ||||| | ||| || || ||| Sbjct 29112 AGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCTGGAGGA 29053 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| |||| |||||| || || | || || ||||| |||| || Sbjct 29052 ATTCCTTCTCTGTCCTGAATTTTCGCCTTCACGTTATCAATTGTATCTGAGCTTTCAACT 28993 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || ||||| || ||||||||||| ||||| ||||||||| Sbjct 28992 TCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCATA 28945 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | | | ||| | ||| || || || || || || || |||||||| Sbjct 35402 GCCACCACGAAGACGGAGAACAAGATGGAGAGTTGATTCCTTCTGGATACTGTAATCGGC 35343 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | | | || || | ||||| || || ||||||| |||||||| || || Sbjct 35342 AAGAGTGCGCCCATCCTCAAGCTGTTTCCCTGCAAATATCAAGCGCTGTTGATCTGGAGG 35283 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||| || || ||| || || || | || || ||||| |||| || Sbjct 35282 AATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTATCTGAGCTTTCAAC 35223 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || ||||| || ||||||||||| ||||| ||||||||| Sbjct 35222 TTCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCATA 35174 >seq33714 Length=161502 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | ||||| | || ||||| || ||||| || || || |||||||| || Sbjct 23082 CCCCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCA 23023 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | ||| | || || | ||||| || || | ||||||||||||||||| ||| Sbjct 23022 AGTGTCCTCCCATCATCCAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGA 22963 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| || ||||| || ||| | || || ||||| | | || || Sbjct 22962 ATGCCTTCCTTGTCTTGGATCTTTGC-CTTCACATTGTCAATGGTATCTGAACTCTCAAC 22904 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || || ||||| ||||| || ||||| Sbjct 22903 CTCCAGGGTGATGGTCTTCCCAGTTAGCGTTTTGACAAAGATCTGCAT 22856 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || | ||| ||||| || |||||||| || ||||| || Sbjct 21879 CCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGCA 21820 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || || | || || ||||| | |||| | |||||| || ||| Sbjct 21819 AGAGTGCGTCCATCGTCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGAGGA 21760 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || ||| || |||||| | || || ||||| | || || Sbjct 21759 ATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCAACC 21700 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || || |||||||||||||| || |||||| Sbjct 21699 TCAAGGGTGATGGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCATA 21652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| | || |||||||| || ||||| |||||||| || Sbjct 22107 CCACCACGCAGACGAAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCA 22048 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | || || ||||| | || | | ||||||||| ||| Sbjct 22047 AGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTCTGTTGGTCAGGAGGA 21988 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || |||||| | || || ||||| | || || Sbjct 21987 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCAACC 21928 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || || |||||||||||||| || |||||| Sbjct 21927 TCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCATA 21880 >seq33784 Length=161669 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||||||| || || || || ||||| |||||||| || || | ||| | || || Sbjct 105409 ACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGTGTCCTCCCATCATCG 105350 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || |||||||| | |||| ||||| ||||| ||||| ||||||||||| | Sbjct 105349 AGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGA 105290 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| ||| ||| | || || ||||| | || || || || || ||||| || Sbjct 105289 ATCTTTGC-TTTAACATTGTCAATTGTATCTGAGCTCTCCACTTCCAATGTGATGGTCTT 105231 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || || ||||| || ||||| Sbjct 105230 CCCAGTTAAGGTCTTGACAAAGATCTGCAT 105201 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || || ||||| |||||||| || || | ||| | || || Sbjct 105637 ACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGTGTCCTCCCATCCTCG 105578 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || |||||||| | |||| ||||| || || ||||| ||||||||||| | Sbjct 105577 AGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGA 105518 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| ||| ||| | || |||||||| | | || || || | || ||||| || Sbjct 105517 ATCTTTGC-TTTAACATTATCAATAGTATCAGAACTCTCCACCTCAAGAGTGATGGTCTT 105459 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || ||||| || ||||| Sbjct 105458 CCCAGTCAAGGTCTTGACAAAGATCTGCAT 105429 >seq34050 Length=239353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||| ||| ||| | | | || || Sbjct 44126 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCAAGAGTACGGCCATCCTCA 44185 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || |||||||| | || | | ||||||||| || || ||||||||||| Sbjct 44186 AGCTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGG 44245 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || ||||||||| |||| || || | ||| |||||||| Sbjct 44246 ATCTTCGCCTTCACGTTGTCAATAGTATCGGAGCTTTCCACCTCCAGGGTGATGGTTTTC 44305 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || ||||| ||||| Sbjct 44306 CCGGTGAGAGTCTTCACGAAAATCTGCAT 44334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAAT-CGCT 15008 || || | ||||| | ||| ||||||||||| || || || || || ||||||| |||| Sbjct 44564 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCCGCT 44623 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || ||| |||| || | || || || ||| | || | | ||| ||||| || Sbjct 44624 -AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGCCTCTGCTGGTCTGGCGG 44682 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| |||||||| || || ||| || | || || |||||| |||| || Sbjct 44683 GATTCCCTCCTTGTCCTGGATCTTAGCTTTCACGTTGTCAATCGTATCGGAGCTTTCAAC 44742 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| || || || || || ||||| || || || ||||| Sbjct 44743 CTCCAAGGTAATCGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCAT 44790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357054867659000