Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq34050 131 2e-25 seq31522 116 3e-21 seq34423 105 6e-18 seq33279 102 7e-17 seq33714 93.3 4e-14 seq33784 87.8 2e-12 >seq34050 Length=239353 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || ||||| |||||||| |||||| || ||| | || || | ||| Sbjct 44815 ATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCGAGGGTACGACCGTCCTCGAGTTG 44874 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || ||| | |||| | |||||||||||||| ||||| || ||||||||||| || Sbjct 44875 CTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTATCTTGAATCTT 44934 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | ||||||||| |||||| |||||||||| || |||||||| Sbjct 44935 GGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTAATAGTCTTGCCGGT 44994 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| ||||| || |||||| Sbjct 44995 TAGGGTTTTCACAAAGATCTGCATC 45019 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| |||||||||| ||| | ||| || || |||||||| || ||||| || ||| Sbjct 44333 ATTCCTCCACGGAGCCTCAGCACCAAATGAAGGGTGGATTCCTTCTGAATATTGTAGTCG 44392 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| || || | || ||||| ||| | || | | |||||||| || Sbjct 44393 GCTAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGG 44452 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || ||||| || || || | || | |||| |||||| || || Sbjct 44453 GGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCA-CGTTGTCTATGGTGTCAGAGCTTTC 44511 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | |||| || ||||||||||| ||||| || || || |||||| Sbjct 44512 AACCTCCAAGGTAATAGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCATC 44563 >seq31522 Length=43835 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| | ||||| || ||||||||||| ||||| || |||||||| |||||| Sbjct 29175 ATACCACCGCGCAACCTCAGAACCAGATGCAGCGTCGATTCTTTCTGGATATTGTAATCG 29116 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | ||||| || ||| | ||||| | ||||| || || Sbjct 29115 GCTAGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCTGGA 29056 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| |||||| | || |||||||| || | || | || | || || || || Sbjct 29055 GGAATTCCTTCTCTGTCCTGAATTTTCGCCTTCA-CGTTATCAATTGTATCTGAGCTTTC 28997 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | |||||| || || |||||||| ||||| |||||||| Sbjct 28996 AACTTCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCAT 28946 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||||||||| |||||| | |||||| | || ||| || Sbjct 35383 ACAAGATGGAGAGTTGATTCCTTCTGGATACTGTAATCGGCAAGAGTGCGCCCATCCTCA 35324 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| ||||| ||||||| || || || || || ||||| ||||||||||| ||| Sbjct 35323 AGCTGTTTCCCTGCAAATATCAAGCGCTGTTGATCTGGAGGAATTCCTTCTTTATCCTGA 35264 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || | || | || | || || || || ||||| || || | |||||| Sbjct 35263 ATCTTCGCCTTCA-CGTTCTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATCGTTTT 35205 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||||||| ||||| |||||||| Sbjct 35204 CCCAGTCAGAGTTTTCACAAAGATTTGCAT 35175 >seq34423 Length=256361 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || |||||||| ||||| || || ||| || ||| || || Sbjct 118966 CACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 119025 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | |||||||| ||| | |||| | ||||||||||| || || ||||| || ||||| Sbjct 119026 GAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCTTG 119085 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || |||| || | || | |||||||||| ||| || ||||| || | || | Sbjct 119086 GATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAACTCTCCACCTCGAGGGTGATGGTCT 119144 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | |||||||| ||||| || || || |||||| Sbjct 119145 TTCCGGTTAGGGTTTTGACGAAGATCTGCATC 119176 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || |||||||| ||||| || |||||| || ||| || || Sbjct 118738 CACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTC 118797 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | |||||||| ||| | |||| | ||||||||||| || || || || || || || Sbjct 118798 GAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTG 118857 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| || ||||| || | || | ||||||||| ||| || ||||| || | || | Sbjct 118858 AATCTTAGCTTTGA-CGTTGTCAATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCT 118916 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| ||||| || || |||||||| Sbjct 118917 TTCCAGTTAGGGTTTTGACGAAGATTTGCAT 118947 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||||||||| | ||| | || || || || ||||| ||||| || |||||| Sbjct 118490 ATTCCACCGCGGAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCG 118549 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | ||||| || ||| | || | | ||||| || || Sbjct 118550 GCGAGGGTACGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGATCTGGG 118609 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || || || || |||| || | || | ||||| || || Sbjct 118610 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTATCAATTGTGTCTGAGCTTTC 118668 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || ||||||||||| ||||| ||||| |||||||| Sbjct 118669 AACCTCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCAT 118719 >seq33279 Length=59633 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||| ||||| || |||||| || ||| || || | || Sbjct 12939 TGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGCGAGGGTACGGCCGTCTTCGAGCTGC 12998 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| | ||||||||| || ||||| || || || || || || || Sbjct 12999 TTCCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTA 13058 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | |||||||||| |||||| |||||||| | || |||||||| Sbjct 13059 GCCTTAA-CGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGT 13117 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| ||||| || |||||| Sbjct 13118 TAGGGTTTTCACAAAGATCTGCATC 13142 >seq33714 Length=161502 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAG--AATCGT 45189 || || || || || || ||||||||||||||||| | ||| || | | ||| | Sbjct 21633 ACAAGGTGGAGGGTAGACTCCTTTTGGATATTATAGT--CTGCAAGTGTACGGCCATCTT 21576 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || |||||||| | |||| || || || || || ||||| ||||| ||||||| Sbjct 21575 CAAGCTGCTTTCCTGCAAAAATCAGCCGCTGTTGATCTGGAGGAATTCCTTCCTTATCTT 21516 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || ||| || | || | ||| || ||| ||| || |||||||||| || | Sbjct 21515 GGATCTTTGCCTTAACATTATCAATGGTATCAGAACTCTCAACCTCGAGAGTAATAGTCT 21456 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || ||||| |||||||| || |||||| Sbjct 21455 TTCCAGTAAGAGTCTTTACAAAGATCTGCATC 21424 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| | ||| ||||| || ||||| || || || || || | || | ||| Sbjct 23068 CAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCTCCCATC 23009 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| ||||| ||||| | ||||| || || ||||| || ||||||||||| || || Sbjct 23008 ATCCAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTC 22949 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||| || ||| || | || | ||| || ||| ||| || || || || | || Sbjct 22948 TTGGATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAGGGTGATGGT 22889 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||| ||||| || ||||| Sbjct 22888 CTTCCCAGTTAGCGTTTTGACAAAGATCTGCAT 22856 >seq33784 Length=161669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | || ||||| ||| || ||||| ||||| || ||||| || || Sbjct 104657 ATCCCTCCCCTCAGGCGCAGCACTAAATGGAGTGTTGACTCCTTCTGAATATTGTAGTCT 104598 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| || | || || || || | |||| | |||||||| || Sbjct 104597 GCAAGTGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 104538 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| |||||||| | | |||| || | || | || | ||||| || ||| Sbjct 104537 GGAATGCCTTCCTTATCTTGGA-TCTTTGCTTTAACGTTGTCAATTGTGTCTGAGCTCTC 104479 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | || | || || || || || || |||||||| || |||||| Sbjct 104478 CACTTCCAATGTGATGGTCTTCCCTGTGAGTGTCTTTACAAAGATCTGCATC 104427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451565886904000