Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq34118 187 3e-42 seq34317 152 6e-32 seq33222 149 8e-31 seq30018 87.8 2e-12 >seq34118 Length=323312 Score = 187 bits (206), Expect = 3e-42 Identities = 229/313 (73%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 6549 AGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAG 6608 |||| || ||||| || | ||||| || | ||| ||||| || || || ||| || | Sbjct 6756 AGATTTGGGACCAAAAGTGGTTAGCAGTAATCATTGAATAAGTTTCTTCAGATTGAGTTG 6815 Query 6609 GCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAG 6668 ||| ||| || ||| ||||||| ||||| |||||||| |||||||| ||||| | Sbjct 6816 GCTTAAAAGCACAGAATGTATTTGCACCATCACCGTCTTCAAATAAAGTATTTTCTACGG 6875 Query 6669 TAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATAT 6728 ||||||| |||||||| || ||||| || || || | ||| | || |||||||||| Sbjct 6876 TAGCACCATGAATAGCGCATAGCAAGGCAGTGCCCAATACACCGACAACTCCCATCATAT 6935 Query 6729 GAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCG 6788 |||| |||| | ||||| || || || || || | ||||| | | | || ||||| | Sbjct 6936 GAAATGGGTACAATGTCCAATTATGAAACCCTTGAAAAAAGAGGATGGATCGAAATATAG 6995 Query 6789 CTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAA 6848 ||| |||||||| |||||||||||||||| ||||| || || ||||| || | | Sbjct 6996 TTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGCGGATAAATCAAGA 7055 Query 6849 AGACAGACACAAA 6861 | ||||| ||||| Sbjct 7056 ATACAGAAACAAA 7068 >seq34317 Length=297777 Score = 152 bits (168), Expect = 6e-32 Identities = 148/189 (78%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 7632 CACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCA 7691 |||||||||||| ||||| | ||| |||||||| ||||||||||| ||||||||||||| Sbjct 200416 CACGACCTTGACTATCAACTACGGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCA 200357 Query 7692 TGGTGCTAACACCAAGAGCAGTGAACCAGAT-----GCCAACAACTGGCCATGCTGCGAG 7746 | |||| | ||| | ||| ||||||||||| || || || ||||| || | | Sbjct 200356 TAATGCTGATACCTAAAGC-GTGAACCAGATACCTACCCTACTACAGGCCAAGCAACTAA 200298 Query 7747 GAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAA 7806 ||||||||| | |||||| ||||||||||| ||| ||||||||||||| ||||||| Sbjct 200297 GAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATTGACCAAA 200238 Query 7807 GTATCCGTG 7815 || || || Sbjct 200237 ATAACCATG 200229 >seq33222 Length=111615 Score = 149 bits (164), Expect = 8e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 6575 GTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGAT 6634 || ||||| ||||| || || || ||| || || | ||| || ||| ||||||| Sbjct 60345 GTAACCATTGAATAAGTTTCTTCAGATTGAGTTGGGTTAAAAGCGCGGAATGTATTTGCA 60404 Query 6635 TGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAAT 6694 |||||||||||||| |||||||| |||| ||||||||| ||||||| || ||||| Sbjct 60405 CCATCACCATCTTCAAATAAAGTATTTTCTATAGTAGCACCATGAATAGTGCATAGCAAG 60464 Query 6695 GCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGG 6754 | |||| || | ||| || || |||||||||||||| ||||| | ||||| || || Sbjct 60465 GGAGCACCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGA 60524 Query 6755 AAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 || || || | |||| | ||| || ||||| ||||| |||||||| Sbjct 60525 AACCCTTGAAAAAAGATGATGAATCGAAATATAGCTGCTACACCAAA 60571 >seq30018 Length=17342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 7919 GAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGG 7978 ||||||||||| |||| || ||||| ||| | || |||||||| || || | ||| || Sbjct 7305 GAACCATGCATAGCACATAATAGAGAGCCATCGAATACACCAGCTACACCTAACATATGA 7246 Query 7979 AAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGT 8034 || |||||| | || |||||||||| || ||| | |||| |||| | ||||| || Sbjct 7245 AATGGGTGCGTAAGAGTGTTGTGCTCGGCCTGGGATACAATCATGAAATTGAAAGT 7190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621522894256000