Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq33599 132 6e-26 seq34050 114 2e-20 seq33753 113 6e-20 seq33462 86.0 8e-12 >seq33599 Length=161954 Score = 132 bits (146), Expect = 6e-26 Identities = 197/277 (71%), Gaps = 13/277 (5%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||| || || ||||| | |||||||||||| ||| || Sbjct 157760 GCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCC 157701 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||| ||||| |||| |||||| || |||||||| ||||||||||||||| Sbjct 157700 GGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGATC 157641 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA--GCGGGACTTTGTATCAA 127697 ||||| ||||| ||||| || || | |||||| || || || || | | ||||| Sbjct 157640 CCCTCAACACAAGCGAAGGCCAACAAACGCTCAGCGAATGATTCCGAGCC-----ATCAA 157586 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||| | ||||||| ||||| ||||| | ||| || || || | ||||| | | Sbjct 157585 TCCAACGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGA 157526 Query 127758 AGA---GTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791 | | ||||||| ||| || ||| |||||||| Sbjct 157525 ACAACCTATCCTTCTCTTCAGA---ATCCTTGATGTA 157492 >seq34050 Length=239353 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||| || || ||||| | |||||||||||| | | || Sbjct 39580 GCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGATAACCCC 39521 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||| ||||| |||| |||||| || |||||||| ||||||||||||||| Sbjct 39520 GGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGATC 39461 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| ||||| || || || || | |||||| || || || Sbjct 39460 CCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA 39420 >seq33753 Length=114126 Score = 113 bits (124), Expect = 6e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | ||||| || || ||||| | |||||||||||| ||| | Sbjct 59742 AGCAAAATCGCAGTGCAACCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACTC 59683 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| | ||| ||||| |||| |||||| || |||||||| |||||||||| ||| Sbjct 59682 CGGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGATGAT 59623 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 |||||| ||||| || || || || | |||||| || || || Sbjct 59622 CCCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA 59581 >seq33462 Length=126448 Score = 86.0 bits (94), Expect = 8e-12 Identities = 247/372 (66%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| |||||||| ||||||||||| ||||| || || || || | ||||||||| | Sbjct 81233 GAACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCCACC 81292 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 | | || || | | ||| | || || || ||||| || |||||||| || || || Sbjct 81293 CCCAAGCCCTGCTCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGCA 81352 Query 12911 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || | ||| || ||| ||||| | ||| | |||||| || || ||||||| Sbjct 81353 -GGGGGCTTTAGACTTGGCCTTCTCAAACAAATCCCTCACTCTGGAAGCCCCCACACCCA 81411 Query 12970 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 13029 |||| | ||||||||| | | || | ||| | ||| || || | ||||| | Sbjct 81412 CAAATAACTCCACAAACTCTGAAGCAGCACAGGAAAAGAATGGAACCCCAGCCTCACCAG 81471 Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCAC 13089 | | |||| || | ||||||||||| || || ||| ||| | | || | |||| Sbjct 81472 CCACTGCTCTAGCCAAAAGGGTCTTCCCAGTTCCAGGTGGCCCAACCA-AAAGACACCCT 81530 Query 13090 GT-GGGATCCTGGCACCACTTCCAAAGTAGCGCTC-GGGTTGTTTAAGAAAGTCCACGAT 13147 | ||||| ||||||| || || || ||||| || |||||| || || | Sbjct 81531 TTAGGGATTTTGGCACCCAGGGCAGTATATTTATCAGGGTTTTTCAAGAAA-TCTACCAC 81589 Query 13148 TTCTTCCAATTC 13159 ||||| |||||| Sbjct 81590 TTCTTGCAATTC 81601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612913631784000