Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq33784 84.2 2e-11 seq33279 84.2 2e-11 >seq33784 Length=161669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || ||||| || || | ||| |||| || | ||| || || ||||| Sbjct 105847 TCCTTCTGGATGTTATAGTCTGCAAGGGTGCGCCCATCCTCAAGTTGCTTACCAGCAAAA 105788 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | |||||||| || | || | ||||| ||||| || ||| ||||| | Sbjct 105787 ATCAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTTGCTTTAACATTG 105728 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||| |||| ||| ||||| ||||| || ||||| || || ||||| || || || Sbjct 105727 TCAATTGTATCTGAGCTCTCCACTTCCAATGTGATTGTCTTCCCTGTTAAGGTCTTGACA 105668 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 105667 AAGATCTGCAT 105657 >seq33279 Length=59633 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | |||| ||| ||||| || || |||||||| ||| Sbjct 11775 CCACCACGGAGACGGAGAACAAGGTGCAGGGTGGACTCTTTCTGGATGTTATAATCAGCC 11834 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| ||||| || || || |||| || | | ||||||||| | || Sbjct 11835 AGAGTCCTTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGG 11894 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||| || ||||| || || ||| | | ||| || ||||| | |||||||| Sbjct 11895 ATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATA--GTGTCAGAGCTTTCCA 11952 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||| || || || || | || || || || |||||||| Sbjct 11953 CCTCCAAAGTAATGGTCTTTCCAGTCAGGGTCTTCACAAATATCTGCAT 12001 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | |||||| || ||||| || | |||| ||| || || || || |||||||| Sbjct 12458 GCCACCCCTCAAACGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 12517 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || || |||| || | || || ||| |||| || || | |||||| || | ||| Sbjct 12518 CAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 12577 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCA 39670 | || || ||||| || || |||| ||| | | || |||| | ||| || | Sbjct 12578 AATTCCCTCCTTGTCCTGGATCTTGGCCTTAA-CGTTGTCAATGGTGTCAGAGCTCTCAA 12636 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || || || | ||||| |||||||||||||| Sbjct 12637 CCTCGAGAGTTATGGTCTTTCCGGTGAGGGTTTTCACGAAGATCTGCAT 12685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347041921914200