Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq33599 125 9e-24 seq34050 123 3e-23 seq34345 122 1e-22 seq33462 96.9 4e-15 seq33753 93.3 5e-14 seq34321 82.4 9e-11 >seq33599 Length=161954 Score = 125 bits (138), Expect = 9e-24 Identities = 306/456 (67%), Gaps = 12/456 (3%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || |||||||| | || || || || ||||||||||| |||||||||||||| Sbjct 157600 TCATTCGCTGAGCGTTTGTTGGCCTTCGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGT 157659 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || || ||||| | ||||| || ||||| ||| | ||||| || | | |||||| || Sbjct 157660 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTGTCCTTCTCGAAT 157719 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATT 102349 ||| | ||||| || || ||||| | ||| || ||||| ||| | || | | Sbjct 157720 GAGTTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTTGC-GTGCATGCTCTATGGGCT 157778 Query 102350 ATTGCGTATTAA----ACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTG 102405 ||| | | || | | | || | | | ||| | | | ||| ||||| |||| Sbjct 157779 GTTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAAGTCACT-TGTGGTT---GAAGCTGTTG 157834 Query 102406 AGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 102465 | ||||||| || |||| | | ||||| ||||| || ||| | | || |||||| | Sbjct 157835 ATATTGAGAGGGAATTCGTGTGTGATGCGCTTCCCTGTGCTTTGGTGGGGATGAATGGGG 157894 Query 102466 AAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGC 102525 | |||| | |||| || || | ||| ||||||||||| | | | || ||| ||| Sbjct 157895 ACCTGATGAGCCAATACATAGAATTTGTGGCTGATAGATTGCT-AGGTGCATTGGGATGC 157953 Query 102526 -CTCCAATTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGG 102584 | | | | || | ||||||| ||||| | |||||| || ||| | | ||| Sbjct 157954 AGTAAAGTGTATAATGTCCAGAATCCGTTTGATTGGATGGAGCTGATCAGCTTACAGGGG 158013 Query 102585 AAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 102620 ||||| || ||||| || ||||| ||||| || ||| Sbjct 158014 AAGACCAATTTCTTTGAGAAGAGAGTTGGAGAATAT 158049 >seq34050 Length=239353 Score = 123 bits (136), Expect = 3e-23 Identities = 309/458 (67%), Gaps = 16/458 (3%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || |||||||| | || || ||||| ||||||||||| |||||||||||||| Sbjct 39420 TCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGT 39479 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || || ||||| | ||||| || ||||| ||| | ||||| || | | |||||| || Sbjct 39480 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTATCCTTCTCGAAT 39539 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATT 102349 ||| | ||||| || || ||||| | ||| || ||||| ||| | || | | Sbjct 39540 GAGTTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTTGC-GTGCATGCTCTATGGGCT 39598 Query 102350 ATTGCGTATTAA----ACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTG 102405 || | | || | | | || | | | ||| | | | ||| ||||| |||| Sbjct 39599 GCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAAGTCACT-TGTGGTT---GAAGCTGTTG 39654 Query 102406 AGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 102465 | ||||||| || |||| | | || || ||||| || ||| | | || |||||| | Sbjct 39655 ATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTGTGCTTTGGTGGGAATGAATGGGG 39714 Query 102466 AAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTG-TTGAAGCAGATCGGGGTG 102524 | |||| | |||| || || | ||| ||||||||||| | || || || ||| || Sbjct 39715 ATCTGATGAGCCAATACATAGAATTTGTGGCTGATAGATTGCTAGATGC--ATTGGGATG 39772 Query 102525 C-CTCCAATTTGGAA-CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACG 102582 | | | | | || ||||| ||||| ||||| | |||||| || ||| | | | Sbjct 39773 CAGTAAAGTGTACAATGTCCAA-AATCCGTTTGATTGGATGGAGCTGATCAGCTTACAGG 39831 Query 102583 GGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 102620 ||||||| || ||||| || ||||| ||||| || ||| Sbjct 39832 GGAAGACCAATTTCTTTGAGAAGAGAGTTGGAGAATAT 39869 >seq34345 Length=307576 Score = 122 bits (134), Expect = 1e-22 Identities = 233/336 (69%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| |||||| | ||||| || ||||| || || | || || |||||| || ||| Sbjct 56814 TCAAGAATATCAGCACGATTAGTGGCGGCAATAACTATGATTCCGGTGTTTCCTT--CAA 56757 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 |||| ||||| ||||||| || ||||| | ||||| || | || |||||| || Sbjct 56756 AACCGTCCATTTCTGTCAGGAGTTGGTTTAGGGTTTGCTCTCTCTCGTCATTCCCTCCGC 56697 Query 16036 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 16095 | ||| | | | |||| || || |||||||| ||||||| || || ||||| | Sbjct 56696 CAATACCGGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAGG 56637 Query 16096 GTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 16154 | ||||| || ||| ||| || || || ||||| || || ||||||||| Sbjct 56636 GAGCGTTTTCCTTGGCTTTCTTGAAA-AGGTCACGGACACGAGATGCACCGACACCAACA 56578 Query 16155 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 16213 |||||||| ||||| | || | ||| || | || ||| || ||| | |||||| || Sbjct 56577 AACATCTCGACAAATTCTGAACCTGAA-ATCGAGAAGAAAGGAACACCGGCTTCACCAGC 56519 Query 16214 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 |||||| ||| || || ||||| || ||||| || Sbjct 56518 TATGGCTTTGGCTAGTAGGGTCTTCCCGGTACCAGG 56483 >seq33462 Length=126448 Score = 96.9 bits (106), Expect = 4e-15 Identities = 191/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||| ||||| |||||||| || || | ||||||||| | | Sbjct 81234 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCCACCC 81293 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | || || | | ||| | ||||| |||||||||||||||||||| || ||||| Sbjct 81294 CCAAGCCCTGCTCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGCAG 81353 Query 16095 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 || | ||| | | || ||||| | ||||| ||| || | || |||||||| Sbjct 81354 GG--GGCTTTAGACTTGGCCTTCTCAAACAAATCCC--TCACTCTGGAAGCCCCCACACC 81409 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||| | ||||||||| | || || | ||| | ||| || || || ||||| Sbjct 81410 CACAAATAACTCCACAAACTCTGAAGCAGCACAGGAAAAGAATGGAACCCCAGCCTCACC 81469 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || | |||| || | ||| ||||| || || || || Sbjct 81470 AGCCACTGCTCTAGCCAAAAGGGTCTTCCCAGTTCCAGG 81508 >seq33753 Length=114126 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || |||||||| | || || ||||| ||||||||||| ||| |||||||||| Sbjct 59581 TCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCATCTTCTCTGGGAGT 59640 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || || ||||| | ||||| || ||||| ||| | ||||| | | | |||||| || Sbjct 59641 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGAGTTGTCCTTCTCGAAT 59700 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| | ||||| || || ||||| | ||| || ||||| Sbjct 59701 GAGTTGATCTCGCGAGATGAGGGGTTGCACTGCGATTTTGC 59741 >seq34321 Length=180555 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 112530 GTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGT 112589 || |||| |||||| |||| | |||||||| || ||||| || || || ||||| Sbjct 111224 GTTACAACAAACCTGAACAAAATTATTGATGTCAACTTTTATCCTGTCGAAACTGCAAAG 111165 Query 112590 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC 112649 || |||||| || | ||| | || ||||| | |||||||||||||| || || |||| Sbjct 111164 AACTCTAATTTGCGTCACAGGCCCATTGGGATTGGTGTCCAAGGTCTTGCTGACACATTC 111105 Query 112650 ATTCTTTGTCGCCA-CGCATTTGATTC 112675 ||| || ||| || || |||||||| Sbjct 111104 ATT-TTACTCGGCATGGCTTTTGATTC 111079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620141831728000