Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq33599 116 4e-21 seq34050 98.7 1e-15 seq33753 91.5 2e-13 >seq33599 Length=161954 Score = 116 bits (128), Expect = 4e-21 Identities = 153/209 (73%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 119510 AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCT 119569 ||||||| |||| || ||||| | |||||| |||| | | || ||||| | || | Sbjct 157745 AAGCCCT-CATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCGGCATCAAACCGCG 157687 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 || || ||||| || || ||||||||||| ||||| |||||||| ||||| ||||| || Sbjct 157686 CTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGATCCCCTCAACACAAGC 157627 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGT--CGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 ||| || || | ||||||||| || | | |||| | || | ||| ||||||||| Sbjct 157626 GAAGGCCAACAAACGCTCAGCGAATGATTCCGAGCC--ATCAATCCAACGGAGAGCCCAC 157569 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGT 119716 || ||||| ||| | ||||| ||||| Sbjct 157568 TTAGCCTTCTTCTCCACACAGGGCACAGT 157540 >seq34050 Length=239353 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 119510 AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCT 119569 ||||||| |||| || ||||| | |||||| |||| | | || ||||| | || | Sbjct 39565 AAGCCCT-CATCTCGCGAGATCAACTCATTCGAGAAGGATAACCCCGGCATCAAACCGCG 39507 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 || || ||||| || || ||||||||||| ||||| |||||||| ||||| ||||| || Sbjct 39506 CTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGATCCCCTCAACACAAGC 39447 Query 119630 GAAAGCGAATAGACGCTCAGCAAA 119653 || || || | ||||||||| || Sbjct 39446 AAAGGCCAACAAACGCTCAGCGAA 39423 >seq33753 Length=114126 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 119513 CCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCA-AAGTCCAGGCATGAGTCCTCTTT 119571 ||| ||||| || ||||| | |||||| |||| | || ||| ||||| | || | | Sbjct 59724 CCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACTCC-GGCATCAAACCGCGCT 59666 Query 119572 TCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGA 119631 | || ||||| || || ||||||||||| ||||| |||| ||| ||||| ||||| || | Sbjct 59665 TTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGATGATCCCCTCAACACAAGCAA 59606 Query 119632 AAGCGAATAGACGCTCAGCAAA 119653 | || || | ||||||||| || Sbjct 59605 AGGCCAACAAACGCTCAGCGAA 59584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588406165720000