Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq34345 123 3e-23 seq33599 120 4e-22 seq34050 107 2e-18 seq33462 95.1 1e-14 seq33753 93.3 5e-14 seq32253 93.3 5e-14 seq34321 86.0 7e-12 seq33558 86.0 7e-12 >seq34345 Length=307576 Score = 123 bits (136), Expect = 3e-23 Identities = 231/335 (69%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| |||||| | ||||| || ||||| || || | || || |||||| || ||| Sbjct 56814 TCAAGAATATCAGCACGATTAGTGGCGGCAATAACTATGATTCCGGTGTTTCCTT--CAA 56757 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 |||| ||||| ||||||| |||||||| | ||||| || | || |||||| || Sbjct 56756 AACCGTCCATTTCTGTCAGGAGTTGGTTTAGGGTTTGCTCTCTCTCGTCATTCCCTCCGC 56697 Query 9343 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402 | ||| | | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 56696 CAATACCGGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAGG 56637 Query 9403 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAA 9462 | ||||| ||| | | || || || || || | || || |||||||||| Sbjct 56636 GAGCGTTTTCCTTGGCTTTCTTGAAAAGGTCACGGACACGAGATGCACCGACACCAACAA 56577 Query 9463 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9521 ||||||| ||||| | || | ||| || | || ||| || ||| | |||||| || Sbjct 56576 ACATCTCGACAAATTCTGAACCTGAA-ATCGAGAAGAAAGGAACACCGGCTTCACCAGCT 56518 Query 9522 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||||| ||| || || ||||| || ||||| || Sbjct 56517 ATGGCTTTGGCTAGTAGGGTCTTCCCGGTACCAGG 56483 >seq33599 Length=161954 Score = 120 bits (132), Expect = 4e-22 Identities = 203/289 (70%), Gaps = 15/289 (5%) Strand=Plus/Minus Query 117263 AGAGC-TCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAG 117321 ||||| | |||| |||| || ||| | ||||||||||| || || | ||||| ||| Sbjct 157771 AGAGCATGCACG-CAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAG 157713 Query 117322 AAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCG 117381 ||| | | || ||||| | ||| ||||| |||| ||| | ||||| || || ||| Sbjct 157712 AAGGACAACCCCGGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCA 157653 Query 117382 GAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA--GCGAG 117439 ||||||||||| ||||| ||||| || || || || | ||||| ||||| || |||| Sbjct 157652 GAGAAGAAGATCCCCTCAACACAAGCGAAGGCCAACAAACGCTCAGCGAATGATTCCGAG 157593 Query 117440 ACTTTGTGTCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTT 117499 | |||| ||| | ||||| || ||||||||||| | ||| || ||||| | Sbjct 157592 CC-----ATCAATCCAACGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTAT 157538 Query 117500 GGATGGCTTCAAATAAC---TGCTTCTTTTCAGATCCATCCTTAATGTA 117545 || || | || ||| | ||||| |||||| |||||| ||||| Sbjct 157537 CAATCGCGTGGAACAACCTATCCTTCTCTTCAGA---ATCCTTGATGTA 157492 >seq34050 Length=239353 Score = 107 bits (118), Expect = 2e-18 Identities = 129/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 117263 AGAGC-TCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAG 117321 ||||| | |||| |||| || ||| | ||||||||||| || || | ||||| ||| Sbjct 39591 AGAGCATGCACG-CAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAG 39533 Query 117322 AAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCG 117381 ||| ||| || ||||| | ||| ||||| |||| ||| | ||||| || || ||| Sbjct 39532 AAGGATAACCCCGGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCA 39473 Query 117382 GAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||||||||| ||||| ||||| ||||| || || | ||||| ||||| || Sbjct 39472 GAGAAGAAGATCCCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA 39420 >seq33462 Length=126448 Score = 95.1 bits (104), Expect = 1e-14 Identities = 188/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || ||||| || || |||||||| || || | ||||||||| | | Sbjct 81234 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCCACCC 81293 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | || || | | ||| | ||||| |||||||||||||||||||| ||||| || Sbjct 81294 CCAAGCCCTGCTCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGCA- 81352 Query 9402 GGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || | ||| | ||| | ||||| | ||| | || || || |||||||| || Sbjct 81353 GGGGGCTTTAGACTTGGCCTTCTCAAACAAATCCCTCACTCTGGAAGCCCCCACACCCAC 81412 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGC 9520 ||| | ||||||||| | || || | ||| | ||| || || || ||||| || Sbjct 81413 AAATAACTCCACAAACTCTGAAGCAGCACAGGAAAAGAATGGAACCCCAGCCTCACCAGC 81472 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | |||| || | ||| ||||| || || || || Sbjct 81473 CACTGCTCTAGCCAAAAGGGTCTTCCCAGTTCCAGG 81508 >seq33753 Length=114126 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||||||||||| || || | ||||| |||||| | | | Sbjct 59741 GCAAAATCGCAGTGCAACCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACTCC 59682 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||| ||||| |||| ||| | ||||| || || ||| ||||||| ||| Sbjct 59681 GGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGATGATC 59622 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| ||||| ||||| || || | ||||| ||||| || Sbjct 59621 CCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA 59581 >seq32253 Length=54634 Score = 93.3 bits (102), Expect = 5e-14 Identities = 299/453 (66%), Gaps = 11/453 (2%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||||||||| |||||||| | | || || ||||| |||||| | ||| || | Sbjct 15956 ACGATCAAAACGACCTGGCCTCAACAGGGCTCTGTCAAGAATATCAGGCCTATTTGTTCC 15897 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 || | ||||| | ||||| | | | ||| ||||||||||| ||||| || || Sbjct 15896 AGCAAGCACAACCACACCTGATGTGGTCTGAAATCCATCCATCTCCACTAAAAGCTGATT 15837 Query 9311 AATAGTTTGTTCCCGTTCATCATTC---GCTGGCATACCACCAGCACTGCGTTGCT-TTC 9366 | || || |||||||||| | ||| | ||||||| | | ||||| | | Sbjct 15836 TAATGTGCTCTCACGTTCATCATGCCCACCTGAAAAACCACCA-CGTCCCCTTGCTCTGC 15778 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 | | |||||||||||||||||||| | |||| ||| | || | || || || Sbjct 15777 CAATCGCATCAATCTCATCAATGAAAATTATACTAGGTGCACATTGTCTTGCCTCTTGAA 15718 Query 9427 A-GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 | || || | |||||| | || || |||||||||||||||| ||| | || | Sbjct 15717 ATAAGCTC-CTAACCCTAGCAGGCCCAACTCCAACAAACATCTCCATAAAATCTGACCCA 15659 Query 9486 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 | | || | || || || ||| |||||| || || ||||| || || || ||||| Sbjct 15658 G-AGATGGAGAGAAAAGGCACACCAGATTCTCCTGCCGTGGCTTTAGCTAGTAGTGTCTT 15600 Query 9545 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC-ACTTCCAA 9603 || ||||| || |||| | || || || ||| ||||| ||||| || | ||| Sbjct 15599 TCCAGTACCAGGAGGACCCACAAGAAGAGCCCCCTTGGGAATTTTGGCTCCTAATTCTTC 15540 Query 9604 AGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | ||| | | || | ||| ||||| | ||||| Sbjct 15539 A-TATTTTTTGGGGTTCTTTAGAAAGTGCACAA 15508 >seq34321 Length=180555 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || ||||| || |||||||| || || ||||| | || ||| ||||| | ||| Sbjct 112743 CTGGGGCCTTGGAGTGCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCGTTG 112802 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | |||||| | | |||| ||||| || | | ||| || || | | Sbjct 112803 AGACATCAAATGATATGTCCTGATGGCAGATTCAATATCATTCTTGTGAATCCCAACAGA 112862 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||||| ||| || |||||| | | || | || || || |||| Sbjct 112863 AACTCTCATCAACATGTGTTGTGGCCTTTCCACAACTTTTCCCT-GAACC-TTCAAGAGG 112920 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | | ||||||||||||| |||||| ||| || ||||| |||| || Sbjct 112921 TAAGACCTTTCAAGGGTTTTGAAACCAAAATAATCATAATCAAAGTCTCG 112970 >seq33558 Length=55639 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| ||||||||||||| ||||||||||||||||||||| | ||| Sbjct 42673 GGCAAAGTCACAGTGTAGACCCTCATCTCTGGAAATAAGTTCATTTGAGAATGCCAAGCC 42614 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 117374 |||||| || | || ||| || | |||| |||| || || || Sbjct 42613 TGGCATTAGGCACCTCTTTTTAAGCCAAAAAATGGCACAAAA 42572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589409993576000