Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq34118 181 1e-40 seq34317 141 1e-28 seq33222 131 2e-25 seq30961 91.5 2e-13 >seq34118 Length=323312 Score = 181 bits (200), Expect = 1e-40 Identities = 228/313 (73%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 181838 TTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGT 181897 || || |||||||| | || ||||| || || || || |||||||||||||||| ||| Sbjct 7068 TTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGT 7009 Query 181898 TTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACG 181957 || ||||| || | || || || | | | ||||| | || || |||||||||||||| Sbjct 7008 TTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACA 6949 Query 181958 CTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCA 182017 | | || || ||||||||||| |||| ||| | |||| || || || | || Sbjct 6948 TTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCT 6889 Query 182018 ATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTC 182077 ||||| |||| ||||| || |||||| | | | |||||||||| |||||||| ||| Sbjct 6888 ATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTC 6829 Query 182078 AAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTC 182137 || || | |||||||| |||||||| ||||||||| |||| || |||| ||| Sbjct 6828 TGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTT 6769 Query 182138 TGGTCTCAGATCT 182150 ||||| || |||| Sbjct 6768 TGGTCCCAAATCT 6756 >seq34317 Length=297777 Score = 141 bits (156), Expect = 1e-28 Identities = 146/190 (77%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 180452 ACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACT 180511 |||||| || || |||| |||||||||| ||||| ||||||||||| ||||| | Sbjct 200228 ACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTT 200287 Query 180512 TCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGC-----ATCTGGTTCACTGCACTGGGC 180566 ||||||||| | | || |||||||| || || ||||||||||| || | || Sbjct 200288 ACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGT 200346 Query 180567 GTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGT 180626 | |||| |||||||||||||| ||||||||||| |||||||| ||| | ||||| || Sbjct 200347 ATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGT 200406 Query 180627 CAAGGTCGTG 180636 |||||||||| Sbjct 200407 CAAGGTCGTG 200416 >seq33222 Length=111615 Score = 131 bits (144), Expect = 2e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 181888 TGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCA 181947 |||||| ||||| ||||| || || || || || ||| | |||| | || || ||||| Sbjct 60581 TGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCA 60522 Query 181948 TAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATT 182007 ||||||||| | || || || ||||||||||| ||||| ||| | |||||| | || Sbjct 60521 TAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTT 60462 Query 182008 ACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGC 182067 || | | ||||| |||| || | || |||||| | | | |||| ||||| || Sbjct 60461 GCTATGCACTATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGC 60402 Query 182068 AAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTAC 182124 |||||| ||| || || | |||||||| |||||||| |||||||||||||| Sbjct 60401 AAATACATTCCGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq30961 Length=93052 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 11320 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 11379 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 11380 CCTACTTGGGGAG 11392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609806241096000