Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq33291 129 7e-25 seq34317 105 8e-18 seq34118 96.9 4e-15 seq33933 89.7 6e-13 seq26119 87.8 2e-12 >seq33291 Length=173966 Score = 129 bits (142), Expect = 7e-25 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || ||||||||| |||||||||| ||||||||||||||||| || ||||| || ||| | Sbjct 161060 CAGAGGTTTGGTGTTCCTATGGGTTATGGAGGTCCTCATGCGGCTTTCTTGGCCACATCC 161119 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||| ||||||| ||| || || |||||| | | ||||||| | ||| | Sbjct 161120 CAAGAGTACAAGAGAATGATGCCCGGGAGAATTATTGGTGTCAGTC--TTGATTCCTCTG 161177 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || || ||| | ||| | |||||||| |||||||||||| | || || || | Sbjct 161178 GGAAGCCTGCTCTAAGAATGGCAATGCAGACTAGGGAGCAGCATATCCGAAGGGATAAGG 161237 Query 153946 CAACCAGTAACATCTGCACAGCTCAGG 153972 |||| || ||||| ||||| ||||||| Sbjct 161238 CAACAAGCAACATTTGCACTGCTCAGG 161264 >seq34317 Length=297777 Score = 105 bits (116), Expect = 8e-18 Identities = 133/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 || ||| ||||| ||||||| | |||||||| |||||| ||||||||||| | Sbjct 200225 AGAACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 200284 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGT---GTAT--GGTTAACCTCTATG 170217 ||||||||||| ||| | || ||||| ||| | |||| |||| || || | Sbjct 200285 GTTACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCACG-CTTTA 200343 Query 170218 GGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 |||||| ||| |||||||||||| | || |||||||| || |||||||| || |||||| Sbjct 200344 GGTATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGAT 200403 >seq34118 Length=323312 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 170959 TGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAA 171018 |||| ||||| ||||||||| |||||||||| || || || ||||| ||| | | Sbjct 7052 TGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAACTA 6993 Query 171019 TTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACA 171078 | ||||| | ||| | || | ||||| || || || |||||| | |||||||| | Sbjct 6992 TATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCATTTCATA 6933 Query 171079 TGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAG 171138 ||||||| |||| || || | || || || |||| || ||||||||||| || | Sbjct 6932 TGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGTGCTACCG 6873 Query 171139 TGCAGAACACATTGTATGAAGAC 171161 | | || || || | ||||||| Sbjct 6872 TAGAAAATACTTTATTTGAAGAC 6850 >seq33933 Length=146745 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 169557 GGGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGC 169616 ||| ||| | | || || ||||| || ||||||||||| ||| |||| | || || Sbjct 32858 GGGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTGTTATTCCGACTTCTGCAGC 32917 Query 169617 TATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTT 169670 ||| || ||||||| |||||||| |||||||| ||| | |||||||||||||| Sbjct 32918 TATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTT 32971 >seq26119 Length=5252 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || ||||||||| |||||||||| |||||||||||| ||| ||| ||||| || ||| | Sbjct 2533 CAGAGGTTTGGTGTTCCTATGGGTTATGGAGGTCCTTATGTTGCTTTCTTGGCCACATCC 2474 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATT 153860 | |||| ||||||| ||| || || |||||| Sbjct 2473 CAAGAGTACAAGAGAATGATGCCCGGGAGAATT 2441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578652411616000