Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq34317 149 7e-31 seq34118 138 1e-27 >seq34317 Length=297777 Score = 149 bits (164), Expect = 7e-31 Identities = 147/189 (78%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 168568 CATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTG 168627 |||||||| || |||| |||||||||||||| ||| ||||||||||| || || || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 168628 CACTTCTTCCTTGCTGCATGGCCTGT-----TGTCGGCATCTGGTTCACCGCCCTTGGCG 168682 ||||||||| | | ||| |||||||| || || |||||||||| ||| | || Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 168683 TCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTC 168742 || || |||||||||||||| ||||||||||| |||||||| ||| | ||||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 168743 AGGGTCGTG 168751 | ||||||| Sbjct 200408 AAGGTCGTG 200416 >seq34118 Length=323312 Score = 138 bits (152), Expect = 1e-27 Identities = 212/301 (70%), Gaps = 1/301 (0%) Strand=Plus/Minus Query 169734 TTCTT-ATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCA 169792 ||||| || || || || || ||||| ||||||||||| || ||||| ||| || Sbjct 7056 TTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCA 6997 Query 169793 GCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTC 169852 | || || | | | | | || | ||||| || || || ||||| ||| | ||||| Sbjct 6996 ACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCATTT 6937 Query 169853 CACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTT 169912 || |||||||| || | || | |||||| || ||||| | ||||| ||||||| | Sbjct 6936 CATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGTGCT 6877 Query 169913 ACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGAT 169972 || ||||| || || || | |||||||||||| |||||||| ||| || ||| | Sbjct 6876 ACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTTTAAG 6817 Query 169973 TCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 170032 | || || ||||| |||||||| ||| | ||||| |||| ||| ||||| || ||| Sbjct 6816 CCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCAAATC 6757 Query 170033 T 170033 | Sbjct 6756 T 6756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573917796792000