Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq34118 172 6e-38 seq33222 154 2e-32 seq34317 143 3e-29 seq33933 87.8 2e-12 >seq34118 Length=323312 Score = 172 bits (190), Expect = 6e-38 Identities = 227/315 (72%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 165606 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 165665 |||||||| || || | || || || || ||||| || ||||||| || || || Sbjct 7070 TTTTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTA 7011 Query 165666 CTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGA 165725 ||| || || ||| | || || | | | | ||||| | ||||| || ||||| |||| Sbjct 7010 GTTTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGA 6951 Query 165726 CCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTG 165785 | ||| | || |||||||||||||| |||| ||| | |||| ||| ||||| | | Sbjct 6950 CATTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCG 6891 Query 165786 CCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTT 165845 | || ||||||| ||| ||||| |||||| | | | |||| ||||| | ||||||||| | Sbjct 6890 CTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACAT 6831 Query 165846 TCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTT 165905 || || ||| | | |||||| |||||||| || |||||| ||||||| |||| | Sbjct 6830 TCTGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACT 6771 Query 165906 TCTGGTCTCAGATCT 165920 | ||||| || |||| Sbjct 6770 TTTGGTCCCAAATCT 6756 >seq33222 Length=111615 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 165667 TTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGAC 165726 ||| || || ||||| || || | ||| | |||| | ||||| || ||||| ||||| Sbjct 60572 TTTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGAC 60513 Query 165727 CTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGC 165786 ||||| || |||||||||||||| ||||| ||| | |||||| | | ||||| | | Sbjct 60512 ATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCAC 60453 Query 165787 CATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTT 165846 || ||||||| ||| |||| |||||| | | | |||||||||| | ||||||||| || Sbjct 60452 TATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 60393 Query 165847 CAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTAC 165894 | || ||| || | |||||| |||||||| || ||||||||||| Sbjct 60392 CCGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34317 Length=297777 Score = 143 bits (158), Expect = 3e-29 Identities = 146/189 (77%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 164490 CACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTG 164549 || ||||| ||||||| ||||||||||||| ||| ||||||||||| ||||| || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 164550 CACTTCTTCCTTGCTGCATGGCCTGT-----TGTTGGCATCTGGTTCACCGCACTTGGTG 164604 ||||||||| | | ||| |||||||| || || |||||||||| ||| | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 164605 TTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTC 164664 | || |||||||||||||| ||||||||||| |||||||| ||| | | ||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 164665 AGGGTCGTG 164673 | ||||||| Sbjct 200408 AAGGTCGTG 200416 >seq33933 Length=146745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 163953 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCAC 164012 || || ||||| || ||||||||||| ||| |||| | || || || ||| | ||| Sbjct 32871 TACGGAAACAATATTATCTCTGGTGCTGTTATTCCGACTTCTGCAGCTATAGGTTTACAC 32930 Query 164013 TTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGG 164065 || ||||| ||||||||||| |||||| ||||||||||| || | |||||| Sbjct 32931 TTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTTGGCTCCGGTGG 32983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556385975256000