Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq30018 122 1e-22 seq34317 87.8 2e-12 >seq30018 Length=17342 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 168951 ATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGC 169010 ||||||||||| || || || | |||| ||||| |||||| | |||| ||| || |||| Sbjct 7164 ATGGTATGCCTTTAAAAAATTTTAGAACTTTCAATTTCATGATTGTATCCCAGGCCGAGC 7223 Query 169011 ACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTC 169070 |||||| ||||| ||| || || |||||| ||| ||||| ||| | |||| ||| |||| Sbjct 7224 ACAACACTCTTACGCACCCATTTCATATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTC 7283 Query 169071 TATTCTCCGCAATGCATGGTTC 169092 |||| | || ||||||||||| Sbjct 7284 TATTATGTGCTATGCATGGTTC 7305 >seq34317 Length=297777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 169192 AGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAG 169251 || |||||| || || ||| ||| |||||||| ||||| |||||||||||||| | Sbjct 200225 AGAACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 200284 Query 169252 TCTTCACTTCTTCCTAGCAGTGTTCCCAGT-----TGTATGTGTATGGTTAACCTCTATG 169306 | ||||||||| ||| | | || || ||| || | ||||| | | || | Sbjct 200285 GTTACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTA 200343 Query 169307 GGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366 |||||| | | |||||||||||| | ||||| || || || |||||||| || || ||| Sbjct 200344 GGTATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGAT 200403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563895502752000