Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq33291 125 8e-24 seq34317 109 6e-19 seq34118 95.1 1e-14 seq33933 86.0 7e-12 seq31551 86.0 7e-12 seq33222 82.4 9e-11 >seq33291 Length=173966 Score = 125 bits (138), Expect = 8e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || ||||||||| |||||||||| || |||||||||||||| || ||||| || ||| | Sbjct 161060 CAGAGGTTTGGTGTTCCTATGGGTTATGGAGGTCCTCATGCGGCTTTCTTGGCCACATCC 161119 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTA--GATAGCGAAG 158560 | |||| ||||||| ||| || || |||||| | ||| |||||| ||| | | Sbjct 161120 CAAGAGTACAAGAGAATGATGCCCGGGAGAATTATTGGT--GTCAGTCTTGATTCCTCTG 161177 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || || ||| | ||| | |||||||| |||||||||||| |||| || || | Sbjct 161178 GGAAGCCTGCTCTAAGAATGGCAATGCAGACTAGGGAGCAGCATATCCGAAGGGATAAGG 161237 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 |||| || ||||| ||||| || || Sbjct 161238 CAACAAGCAACATTTGCACTGCTCA 161262 >seq34317 Length=297777 Score = 109 bits (120), Expect = 6e-19 Identities = 134/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 172521 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAG 172580 || ||| ||||| ||||||| | |||||||| |||||| |||||||||||| | Sbjct 200225 AGAACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 200284 Query 172581 TCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGT---GTAT--GGTTAACCTCTATG 172635 | ||||||||| ||| | || ||||| ||| | |||| |||| || || | Sbjct 200285 GTTACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCACG-CTTTA 200343 Query 172636 GGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT 172695 |||||| | | |||||||||||||| ||||||||||| ||||||||||| || || ||| Sbjct 200344 GGTATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGAT 200403 >seq34118 Length=323312 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 173377 TTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCA 173436 || || || || || ||||| ||| |||||||||| || ||| || ||||| ||| Sbjct 7056 TTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCA 6997 Query 173437 GCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTT 173496 | || ||||| | ||| | || | ||||| || || || |||||| | |||||| Sbjct 6996 ACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCATTT 6937 Query 173497 CACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCA 173556 || |||||||| |||| || || | || || || ||||| || ||||||||||| Sbjct 6936 CATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGTGCT 6877 Query 173557 ACAGTGCAGAACACATTGTATGAAGAC 173583 || || | || || || | ||||||| Sbjct 6876 ACCGTAGAAAATACTTTATTTGAAGAC 6850 >seq33933 Length=146745 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 171972 TGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAA 172031 || ||| ||| | | || || ||||| || ||||||||||| ||| |||| | || Sbjct 32855 TGAGGGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTGTTATTCCGACTTCTGC 32914 Query 172032 CGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTT 172088 || |||||| | ||||| ||||| || |||||||| ||| |||| ||||||||||| Sbjct 32915 AGCTATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTT 32971 >seq31551 Length=26745 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 |||||| ||||| || |||||||| | || || || ||||| ||||| || || || || Sbjct 11422 TGGTGCCGATGTTTGCCATCTAAATCTCCACAAAACGTTCTGCATTCCTCACGGTGGAGG 11363 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTTGTA 159804 ||||||||| | |||||||||||||| || ||| | |||||||| || Sbjct 11362 CGGTCCTGGCATGGGTCCTATTGGTGTGAAGAAGCATTTGGCACCATTTCTA 11311 >seq33222 Length=111615 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 173425 TTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 173484 || ||||| ||||| || ||||| | ||| | || | ||||| || || || ||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 173485 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCC 173544 ||||| |||||||| |||||||| ||||| || || | |||| | || ||||| | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 173545 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGA 173582 ||||||||||| || | | || || || | |||||| Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGA 60414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587482260464000