Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq34118 163 3e-35 seq34317 147 2e-30 seq33222 132 5e-26 >seq34118 Length=323312 Score = 163 bits (180), Expect = 3e-35 Identities = 224/313 (72%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 164035 TTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCT 164094 || ||| ||| || | || || || || ||||| || |||||||||| || || | Sbjct 7068 TTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGT 7009 Query 164095 TTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACT 164154 ||||| || ||| | || || ||| | || | || ||||||| |||||||| ||||| Sbjct 7008 TTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACA 6949 Query 164155 TTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCT 164214 ||| |||| || |||||||||||||||| ||| || | ||| || ||||||| ||| Sbjct 6948 TTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCT 6889 Query 164215 ATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTT 164274 ||||| || | || || |||||||| || | |||||| || || ||||| || || Sbjct 6888 ATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTC 6829 Query 164275 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 164334 || ||| | | || || ||||| |||||||| ||| | ||||| |||| ||| Sbjct 6828 TGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTT 6769 Query 164335 TGGTCGCAGATCT 164347 ||||| || |||| Sbjct 6768 TGGTCCCAAATCT 6756 >seq34317 Length=297777 Score = 147 bits (162), Expect = 2e-30 Identities = 148/191 (77%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 163090 CATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTG 163149 |||||||| || |||| ||||||||||||||||| ||||||||||| ||||| || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 163150 CACTTCTTCCTTGCTGCATGGCCTGT-----TGTCGGCATCTGGTTCACCGCCCTTGGCG 163204 ||||||||| | | ||| |||||||| || || |||||||||| | ||| | Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA---CGCTTTAGG 200345 Query 163205 TGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGG 163262 | ||| | |||||||||||||| ||||||||||| |||||||| ||| | ||||| | Sbjct 200346 TATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAG 200405 Query 163263 TCAGGGTCGTG 163273 ||| ||||||| Sbjct 200406 TCAAGGTCGTG 200416 >seq33222 Length=111615 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 164094 TTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGAC 164153 |||||| || ||||| || || ||||| || | || ||||||| |||||||| ||||| Sbjct 60572 TTTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGAC 60513 Query 164154 TTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGC 164213 |||||||| || ||||||||||||||||| ||| || | || | | ||||||| | Sbjct 60512 ATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCAC 60453 Query 164214 TATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTT 164273 |||||| || | || | |||||||| || | ||||||||| || ||||| || || Sbjct 60452 TATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 60393 Query 164274 TAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCAC 164321 || ||| | | || || ||||| |||||||| ||||| || Sbjct 60392 CCGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557044537480000