Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq34118 163 3e-35 seq33222 141 1e-28 seq34052 89.7 6e-13 >seq34118 Length=323312 Score = 163 bits (180), Expect = 3e-35 Identities = 225/315 (71%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 168895 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 168954 |||||||| || || | || || || || ||||| || ||||||| || || || Sbjct 7070 TTTTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTA 7011 Query 168955 CTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGA 169014 ||| || || || | || || |||| | | ||||| | ||||| || ||||| |||| Sbjct 7010 GTTTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGA 6951 Query 169015 CACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTG 169074 || || | ||||||||||||||||| || | ||| | ||||| |||||||| | | Sbjct 6950 CATTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCG 6891 Query 169075 CCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTT 169134 | |||||||||| ||| ||||| |||||| | | | |||| ||||| |||||||| | Sbjct 6890 CTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACAT 6831 Query 169135 TCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTT 169194 || || ||| | ||||| || || || ||||||||| ||||||| |||| | Sbjct 6830 TCTGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACT 6771 Query 169195 TCTGGTCTCAGATCT 169209 | ||||| || |||| Sbjct 6770 TTTGGTCCCAAATCT 6756 >seq33222 Length=111615 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 168956 TTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGAC 169015 ||| || || |||| || || |||||| | |||| | ||||| || ||||| ||||| Sbjct 60572 TTTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGAC 60513 Query 169016 ACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGC 169075 | |||| ||||||||||||||||| || || ||| | ||||| | ||||||| | | Sbjct 60512 ATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCAC 60453 Query 169076 CATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTT 169135 |||||||||| ||| |||| |||||| | | | |||||||||| |||||||| || Sbjct 60452 TATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 60393 Query 169136 CAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTAC 169183 | || ||| || ||||| || || || |||||||||||||| Sbjct 60392 CCGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34052 Length=92402 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/149 (74%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | ||||||||| | |||||||| || | || ||||| || ||| ||||||||||| Sbjct 71611 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 71552 Query 167157 ACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGAC 167216 || || | | ||| | ||| || || |||||| | | ||||||||| || || Sbjct 71551 ACTTTATTGACCGCA-----GTATTT-ATTATTGCCTTCATTGCTGCTCCTCCAGTAGAT 71498 Query 167217 ATCGATGGTATCCGCGAACCAGTTGCTGG 167245 || |||||||| || ||||| ||| |||| Sbjct 71497 ATTGATGGTATTCGTGAACCTGTTTCTGG 71469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560065611760000