Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq34118 176 6e-39 seq34317 149 8e-31 seq33222 134 2e-26 >seq34118 Length=323312 Score = 176 bits (194), Expect = 6e-39 Identities = 228/315 (72%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 183593 TTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTA 183652 ||||||| ||||||| | || ||||| || ||||||||| ||||||||||| |||| Sbjct 7070 TTTTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTA 7011 Query 183653 GTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGA 183712 |||| || |||||| | || ||| ||| | | | || |||| || || || || |||| Sbjct 7010 GTTTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGA 6951 Query 183713 CGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTG 183772 | || |||| || |||||||||||||||| ||| || | || || | || | | Sbjct 6950 CATTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCG 6891 Query 183773 CTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACAT 183832 |||| ||||||| || ||||| ||||| || | |||||| || || ||||| |||| Sbjct 6890 CTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACAT 6831 Query 183833 TCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTT 183892 || || ||| | | |||||| ||||| || ||||| ||| |||| || || | | Sbjct 6830 TCTGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACT 6771 Query 183893 TCTGGTCACAAATCT 183907 | ||||| ||||||| Sbjct 6770 TTTGGTCCCAAATCT 6756 >seq34317 Length=297777 Score = 149 bits (164), Expect = 8e-31 Identities = 147/189 (78%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 182499 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTG 182558 ||||| || || |||| |||||||||||||| || ||||||||||| ||||| || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 182559 CACTTCTTCCTTGCTGCATGGCCTGT-----TGTTGGAATCTGGTTCACCGCACTTGGTG 182613 ||||||||| | | ||| |||||||| || || |||||||||| ||| | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 182614 TCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTC 182673 || || |||||||||||||| ||||||||||| |||||||| ||| | ||||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 182674 AGGGTCGTG 182682 | ||||||| Sbjct 200408 AAGGTCGTG 200416 >seq33222 Length=111615 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 183645 TGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCA 183704 ||| |||||||| || |||||||| || ||| ||||| | | || |||| || || || Sbjct 60581 TGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCA 60522 Query 183705 CAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACT 183764 || ||||| || ||||| || ||||||||||||||||| ||| || | || | | | Sbjct 60521 TAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTT 60462 Query 183765 ACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGC 183824 || | |||| ||||||| || |||| ||||| || | ||||||||| || || Sbjct 60461 GCTATGCACTATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGC 60402 Query 183825 AAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTAC 183881 ||| |||||| || ||| | | |||||| ||||| || ||||| |||||||| Sbjct 60401 AAATACATTCCGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611104184120000