Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq34118 159 4e-34 seq33222 145 9e-30 seq34317 134 2e-26 seq34052 91.5 2e-13 seq33933 91.5 2e-13 seq33604 82.4 9e-11 seq31051 82.4 9e-11 >seq34118 Length=323312 Score = 159 bits (176), Expect = 4e-34 Identities = 223/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 166575 TTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCT 166634 || ||| ||| || | || || || || ||||| || ||||||| || || || | Sbjct 7068 TTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGT 7009 Query 166635 TTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACA 166694 || || || || | || || |||| | |||| || ||||||| || || || |||||| Sbjct 7008 TTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACA 6949 Query 166695 CTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCC 166754 || ||||||||||||||||||| || | ||| | | || ||| ||||| | || Sbjct 6948 TTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCT 6889 Query 166755 ATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTC 166814 || ||||||| ||| ||||| || ||| | | | |||| ||||| |||||||| ||| Sbjct 6888 ATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTC 6829 Query 166815 AAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTAT 166874 || || | | |||||| |||||||| ||||||||| |||| || |||| || | Sbjct 6828 TGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTT 6769 Query 166875 TGGTCTCAGATCT 166887 ||||| || |||| Sbjct 6768 TGGTCCCAAATCT 6756 >seq33222 Length=111615 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 166634 TTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGAC 166693 ||| || || |||| || || |||||| || | || ||||||| || || || ||||| Sbjct 60572 TTTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGAC 60513 Query 166694 ACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGC 166753 | |||||||||||||||||||||| || || ||| | | |||| | | ||||| | | Sbjct 60512 ATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCAC 60453 Query 166754 CATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTT 166813 || ||||||| ||| |||| || ||| | | | |||||||||| |||||||| || Sbjct 60452 TATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 60393 Query 166814 CAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTAC 166861 | || || || | |||||| |||||||| |||||||||||||| Sbjct 60392 CCGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34317 Length=297777 Score = 134 bits (148), Expect = 2e-26 Identities = 139/181 (77%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 165469 CACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTG 165528 || || || || |||| | || |||||||| || |||||||| || |||||| | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 165529 CACTTCTTCCTCGCAGCATGGCCTGTAGTTGG-----TATCTGGTTCACTGCTCTTGGTG 165583 ||||||||| | | || ||||||||||| || |||||||||||| ||| | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGTA 200347 Query 165584 TTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTC 165643 | |||| |||||||||||||| ||||||||||| |||||||| || | |||||||||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 165644 A 165644 | Sbjct 200408 A 200408 >seq34052 Length=92402 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 ||||||||||| | || ||||| |||||| | |||||||| ||| | |||| | Sbjct 71593 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAGTA 71534 Query 164851 ATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAA 164910 ||||||| ||| ||||| |||||||| || || || |||||||||||||||||| Sbjct 71533 ------TTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 71480 Query 164911 CCTGT 164915 ||||| Sbjct 71479 CCTGT 71475 >seq33933 Length=146745 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 164920 GGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCA 164979 || ||||| | ||||| ||||| || |||||||||||||| ||||| ||||| || Sbjct 32859 GGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTGTTATTCCGACTTCTGCAGCT 32918 Query 164980 ATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTT 165032 || || | ||||| || || ||||||||||| ||| || | ||||||||||| Sbjct 32919 ATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTT 32971 >seq33604 Length=95044 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 165124 CTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCA 165183 || |||||||| ||||||||| || ||||| || ||||| || |||||| ||||| Sbjct 23264 CTGGGTATGCGCCCTTGGATTGTTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCA 23323 Query 165184 GTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTG 165223 |||||| || |||| || ||||||| || ||||| |||| Sbjct 23324 GTTTTCTTGATCTACCCAATCGGTCAGGGAAGTTTTTCTG 23363 >seq31051 Length=39587 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/105 (79%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 165514 AATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACT 165573 || || |||||| | ||||||||| | || || || |||||||| ||||| ||||||||| Sbjct 26133 AACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTG-CCTGTAGTAGGTATTTGGTTCACT 26075 Query 165574 GCTCTT---GGTGTTAGCACCATGGCATTCAACCTGAACGGTTTC 165615 || | ||| ||| ||| ||||||||||||| ||||||||| Sbjct 26074 TCTTTATTAGGTATTATCAC--TGGCATTCAACCTAAACGGTTTC 26032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563115458176000