Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq33279 122 6e-23 seq34050 104 2e-17 seq33157 104 2e-17 seq33260 102 5e-17 seq34423 89.7 3e-13 seq33784 89.7 3e-13 >seq33279 Length=59633 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||||||| | ||| ||| ||||| ||||| || || | Sbjct 12231 CCTCCCCTCAAACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGCC 12290 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| ||||||||||| || | | |||||||||| | || Sbjct 12291 AGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCTGGGGGG 12350 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | || | ||| | |||||| Sbjct 12351 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACC 12410 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || |||||||| || ||||| ||||||||||| Sbjct 12411 TCCAGGGTGATTGTCTTGCCCGTGAGGGTTTTCACGAAGATCTGCAT 12457 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | | |||||||| | ||| ||| ||||| ||||| || || | Sbjct 12459 CCACCCCTCAAACGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGCC 12518 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| ||||||||||| || | | ||||||||| | || Sbjct 12519 AGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 12578 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| || ||| | || | ||| | |||||| Sbjct 12579 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACC 12638 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| |||||||| ||||| ||||| || ||||| ||||||||||| Sbjct 12639 TCGAGAGTTATGGTCTTTCCGGTGAGGGTTTTCACGAAGATCTGCAT 12685 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||| || | || | | | |||| |||| ||| ||||| ||||| Sbjct 11811 TCTTTCTGGATGTTATAATCAGCCAGAGTCCTTCCATCTTCCAACTGCTTTCCAGCAAAG 11870 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| ||| | || | ||||||||||| |||||| ||| || Sbjct 11871 ATCAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTG 11930 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | || || || | || ||||| ||||| || || ||||||||| Sbjct 11931 TCAATAGTGTCAGAGCTTTCCACCTCCAAAGTAATGGTCTTTCCAGTCAGGGTCTTCACA 11990 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 11991 AATATCTGCATA 12002 >seq34050 Length=239353 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||||| |||| ||| || ||||| || || || |||| Sbjct 44564 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCCGCT 44623 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| |||| | || || ||||| |||||||| || || || | ||||||||| |||| Sbjct 44624 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGCCTCTGCTGGTCTGGCGGG 44683 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| ||| ||| | |||| || | ||||| Sbjct 44684 ATTCCCTCCTTGTCCTGGATCTTAGCTTTCACGTTGTCAATCGTATCGGAGCTTTCAACC 44743 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || || || || || || || ||||||||||| Sbjct 44744 TCCAAGGTAATCGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCAT 44790 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| ||||| | ||| | |||||||||| ||| || ||||||||||| ||||| | Sbjct 44106 TTCCACCCCTGAGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 44165 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | || |||| || ||||| || || ||||| || || | || ||||| | | Sbjct 44166 CAAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCAGGAG 44225 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| |||||| || ||| | || | || | || | Sbjct 44226 GGATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTATCGGAGCTTTCCA 44285 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || |||||||||||||| || |||||||| Sbjct 44286 CCTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTCACGAAAATCTGCAT 44334 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| ||||| |||| ||| ||| |||||||| || ||||| | Sbjct 44334 TTCCTCCACGGAGCCTCAGCACCAAATGAAGGGTGGATTCCTTCTGAATATTGTAGTCGG 44393 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| |||| | || || ||||| |||||||| || || || | ||||||||| | | Sbjct 44394 CTAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGG 44453 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| ||||| || ||| |||| | ||| | |||| Sbjct 44454 GGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCTATGGTGTCAGAGCTTTCAA 44513 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || || || || || || || || || ||||||||||| Sbjct 44514 CCTCCAAGGTAATAGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCAT 44562 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||||| |||| ||| || ||||| || || || || | Sbjct 44792 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 44851 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || || || || || ||||| || || || | |||||||| |||| Sbjct 44852 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 44911 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | |||||||| || |||||| ||||| || | ||||| || | ||| Sbjct 44912 ATGCCCTCCTTATCTTGAATCTTGGCCTTGAC--AT--TGTCGATGGTGTCGGAGCTCTC 44967 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| || || || || || || || || ||||||||||||||||| Sbjct 44968 GACCTCGAGAGTAATAGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 45018 >seq33157 Length=145522 Score = 104 bits (114), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||||| | | | || | || |||||||| |||||||| || Sbjct 122092 TCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGGCCGTCCTCCAGCTGCTTTCCGGCGAAG 122033 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||| ||| || || || Sbjct 122032 ATGAGCCGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCCTTCAC--AT 121975 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || ||| || || | |||||| || || |||||||| || || Sbjct 121974 --TGTCGATGGTGTCGGAGGACTCCACCTCCAGGGTTATCGTCTTCCCCGTGAGGGTTTT 121917 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 121916 CACGAAGATCTGCATCTT 121899 >seq33260 Length=58559 Score = 102 bits (112), Expect = 5e-17 Identities = 145/200 (73%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | |||| | || | || || ||||| |||||||| || Sbjct 34009 TCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAG 34068 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| |||| | ||||||||||| |||||| || || || Sbjct 34069 ATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 34126 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| | ||| || || | |||||| || || ||||| || ||||| Sbjct 34127 --TGTCAATGGTGTCCGATGACTCCACCTCTAGGGTTATCGTCTTCCCCGTCAGGGTCTT 34184 Query 34967 CACAAAGATCTGCATATTCG 34986 ||| ||||||||||| |||| Sbjct 34185 CACGAAGATCTGCATTTTCG 34204 >seq34423 Length=256361 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| || || | ||| | || | || || |||||||||||||| || Sbjct 118756 TTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGTTTTCCGGCGAA 118815 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | ||||||||||| |||||| ||||||| Sbjct 118816 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGAATCTTAGCTTTGACGTT 118875 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||| || |||| ||| ||||| ||||| || || || || || Sbjct 118876 GTCAATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCAGTTAGGGTTTTGAC 118935 Query 34970 AAAGATCTGCAT 34981 ||||| ||||| Sbjct 118936 GAAGATTTGCAT 118947 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| |||||||| || | ||| | | | |||| |||| || || || ||||| Sbjct 118301 TCCTTCTGGATGTTATAATCAGCAAGAGTCCTTCCATCTTCCAATTGCTTCCCTGCAAAA 118360 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | ||||||||||| |||||| || || Sbjct 118361 ATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTAACATTG 118420 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || | |||||| || | || ||||||||||| ||||| |||||||| Sbjct 118421 TCTATGGTGTCCGAGCTCTCAACCTCAAGAGTGATGGTTTTTCCAGTGAGGGTCTTCACG 118480 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 118481 AAAATCTGCAT 118491 >seq33784 Length=161669 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || || || || | ||| || || |||||||| ||||| | | Sbjct 105427 CCTCCCCTCAGTCGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCA 105368 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | ||||||| ||||| || || ||||| || ||||| ||||||||| | || Sbjct 105367 AGTGTCCTCCCATCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGA 105308 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| ||| || | || | || | ||| || Sbjct 105307 ATGCCTTCCTTGTCCTGAATCTTTGCTTTAACATTGTCAATTGTATCTGAGCTCTCCACT 105248 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || ||||| || || || | ||||| |||||||||||||| Sbjct 105247 TCCAATGTGATGGTCTTCCCAGTTAAGGTCTTGACAAAGATCTGCAT 105201 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || || || || | ||| || |||||||| || ||||| | | Sbjct 104654 CCTCCCCTCAGGCGCAGCACTAAATGGAGTGTTGACTCCTTCTGAATATTGTAGTCTGCA 104595 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || ||||| || |||||||| || || | ||||||||| | || Sbjct 104594 AGTGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 104535 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| ||| ||| | || | || | ||| || Sbjct 104534 ATGCCTTCCTTATCTTGGATCTTTGCTTTAACGTTGTCAATTGTGTCTGAGCTCTCCACT 104475 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || ||||| || || ||||| ||||| |||||||||||||| Sbjct 104474 TCCAATGTGATGGTCTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 104428 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || ||||| || | ||| || || |||||||| ||||| | | Sbjct 105655 CCTCCCCTCAGACGCAGCACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCA 105596 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || ||||| || || ||||| || ||||| ||||| ||| | || Sbjct 105595 AGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGA 105536 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| |||||| ||| || || |||| || ||| ||| Sbjct 105535 ATGCCTTCCTTGTCCTGAATCTTTGCTTTAAC--AT--TATCAATAGTATCAGAACTCTC 105480 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || ||||| || || || | ||||| |||||||||||||| Sbjct 105479 CACCTCAAGAGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 105429 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||||||||| | |||| | || |||| || || || Sbjct 105860 GTGAAGGGTGGACTCCTTCTGGATGTTATAGTCTGCAAGGGTGCGCCCATCCTCAAGTTG 105801 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || ||||| ||||||||| | || | || |||||||| |||||| Sbjct 105800 CTTACCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTT 105741 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 ||| || | || | || | ||| || || | || || || || || || Sbjct 105740 TGCTTTAACATTGTCAATTGTATCTGAGCTCTCCACTTCCAATGTGATTGTCTTCCCTGT 105681 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| |||||||||||||| Sbjct 105680 TAAGGTCTTGACAAAGATCTGCAT 105657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324327369067200