Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq34050 107 2e-18 seq33599 100 3e-16 seq33753 98.7 1e-15 seq33140 89.7 6e-13 seq31897 86.0 7e-12 >seq34050 Length=239353 Score = 107 bits (118), Expect = 2e-18 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAA--TGATATAC 18727 || |||||||| ||||||| || ||||||||||| || || |||| ||| |||| | Sbjct 39874 TTCTGATATTCTCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGTAAGCTGATCAGC 39815 Query 18728 ATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 ||||| ||||||| ||||||| ||||| || | ||| || |||| ||| | || Sbjct 39814 --TCCATCCAATCAAACGGATTTTGGACATTGTACACTTTACTGCATCCCAATGCATCTA 39757 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCC 18842 | | |||||| || ||||||| || ||| | |||||| ||| | ||||||||| Sbjct 39756 GCAATCTATCAGCCACAAATTCTATGTATTGGCTCATCAGATCCCCATTCATTCC 39702 >seq33599 Length=161954 Score = 100 bits (110), Expect = 3e-16 Identities = 487/764 (64%), Gaps = 17/764 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAA--TGATATAC 18727 || |||||||| ||||||| || ||||||||||| || || |||| ||| |||| | Sbjct 158054 TTCTGATATTCTCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGTAAGCTGATCAGC 157995 Query 18728 ATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 ||||| ||||||| ||||| | |||||||| | ||| || |||| ||| | || Sbjct 157994 --TCCATCCAATCAAACGGATTCTGGACATTATACACTTTACTGCATCCCAATGCACCTA 157937 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 | | |||||| || ||||||| || ||| | |||||| || | |||||| || | | Sbjct 157936 GCAATCTATCAGCCACAAATTCTATGTATTGGCTCATCAGGTCCCCATTCATCCCCACCA 157877 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | | || || ||||| | ||||| || |||| || || || | || Sbjct 157876 AAGCACAGGGAAGCGCATCACACACGAATTCCCTCTCAATATCAACAGCTTCAACCACAA 157817 Query 18908 TAGATACAACTCTATCTTC-ATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 || || | || || | | | || | | | | | || || ||| Sbjct 157816 GTGACTTCACGCGCTCCTCGCTCAACTTCCTCCTCAACA-GCCCATAGAGCATGCACGCA 157758 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 ||||| || || | ||||| |||| ||||| ||||| || || | || || ||| Sbjct 157757 AAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCGGC 157698 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 |||| || | ||||| | ||||||||||| | ||| ||||| ||||| || || Sbjct 157697 ATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGATCCCC 157638 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCC--ATAACTAGCATCATTATTATGAATCC 19144 || || || || || | | | || | || | | | | || ||||| Sbjct 157637 TCAACACAAGCGAAGGCCAACAAACGCTCAGCGAATGATTCCGAGC-----CATCAATCC 157583 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | || ||||| | ||||||||| | ||||| |||| || || || | | || | Sbjct 157582 AACGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACA 157523 Query 19205 GATACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 | || | ||| || | ||| || | || | || | || | ||||||||| || Sbjct 157522 -ACCTATCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATCTCA 157464 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || ||||| || || || ||||| ||||| ||||| | || || | ||||| Sbjct 157463 GAGTGGATATTCTCGATGGCGATCTGGAATCCATAAAACGCACGCGCCTCCGCAATCTGG 157404 Query 19324 ACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 || || || || || | | || | | ||| || ||| || || || || ||||| Sbjct 157403 ACCTC-CTTCATGAACCGTCCGGCAAGATTCTCCAAAACGATGCCGTCGGAGGCGGCAAA 157345 Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA 19426 ||| || | ||| || |||||||| || || || || ||||||| Sbjct 157344 AAAGGCAAGTACGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTA 157301 >seq33753 Length=114126 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAA--TGATATAC 18727 || |||||||| ||||||| || ||||||||||| || || |||| ||| |||| | Sbjct 60115 TTCTGATATTCTCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGTAAGCTGATCAGC 60056 Query 18728 ATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 ||||| ||||||| ||||| | ||||| || | ||| || |||| ||| | || Sbjct 60055 --TCCATCCAATCAAACGGATTCTGGACATTGTACACTTTACTGCATCCCAATGCACCTA 59998 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCC 18842 | | |||||| || ||||||| || ||| | |||||| ||| | |||||| || Sbjct 59997 GCAATCTATCAGCCACAAATTCTATGTATTGGCTCATCAGATCCCCATTCATCCC 59943 >seq33140 Length=116131 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 47342 TAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAA 47401 ||| ||||||||||||||||| ||| ||| ||||| || | | ||||||||||||||| Sbjct 75506 TAGAACTCTACGGCTATATATGTTAGATGTGTATGGCTCAAAACATTCATTATTTCCAAG 75565 Query 47402 AATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG-CTATTTCTTACTCCAT 47460 |||||| ||||| || || ||||| | || | || ||| |||||| ||||||| Sbjct 75566 AATTTGGCTGGTTGAAGCAGTGGGCATTGGGGCTA-AAAGAAGAGAATTTCTCACTCCAT 75624 Query 47461 ATTTTTGTATC 47471 |||| |||| Sbjct 75625 TCTTTTCTATC 75635 >seq31897 Length=38707 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 47342 TAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAA 47401 ||| |||||||||||||| || ||| ||| ||||| || | | ||||||||||||||| Sbjct 36929 TAGAACTCTACGGCTATAGATGTTAGATGTGTATGGCTCAAAACATTCATTATTTCCAAG 36870 Query 47402 AATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG-CTATTTCTTACTCCAT 47460 |||||| ||||| || || |||| | || | || ||| |||||| ||||||| Sbjct 36869 AATTTGGATGGTTGAAGCAGTGGGCACTGGGGCTA-AAAGAAGAGAATTTCTCACTCCAT 36811 Query 47461 ATTTTTGTATC 47471 ||||||||| Sbjct 36810 TCTTTTGTATC 36800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561564959736000