Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq30018 80.6 8e-11 >seq30018 Length=17342 Score = 80.6 bits (88), Expect = 8e-11 Identities = 101/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| || | || ||| ||||||| ||||| ||||| | ||| || || Sbjct 7302 CCATGCATAGCACATAATAGAGAGCCATCGAATACACCAGCTACACCTAACATATGAAAT 7243 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || ||| |||| | ||||| || |||||| |||| | ||| || || ||||| | | | Sbjct 7242 GGGTGCGTAAGAGTGTTGTGCTCGGCCTGGGATACAATCATGAAATTGAAAGTTCTAAAA 7183 Query 5699 ATACCAAGAGGCATACCAT 5717 | | ||||||||||| Sbjct 7182 TTTTTTAAAGGCATACCAT 7164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152509295936400