Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq34052 93.3 1e-14 seq30018 84.2 7e-12 >seq34052 Length=92402 Score = 93.3 bits (102), Expect = 1e-14 Identities = 114/156 (73%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336 ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct 71468 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAAT 71527 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396 | |||| ||||| || || | | ||||||||| | || |||||||| || | Sbjct 71528 AATAAAT------ACTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAAT 71581 Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACA 26432 || || ||||| | || || || | ||||| ||| Sbjct 71582 GTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 71617 >seq30018 Length=17342 Score = 84.2 bits (92), Expect = 7e-12 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| |||| || ||| ||||||| || || ||||| | |||||| || Sbjct 7302 CCATGCATAGCACATAATAGAGAGCCATCGAATACACCAGCTACACCTAACATATGAAAT 7243 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 || ||| |||| | ||||| || ||||| | |||| ||| ||||||||||| | || Sbjct 7242 GGGTGCGTAAGAGTGTTGTGCTCGGCCTGGGATACAATCATGAAATTGAAAGTTCTAAAA 7183 Query 25957 ATACCAAGAGGCATACCAT 25975 | | ||||||||||| Sbjct 7182 TTTTTTAAAGGCATACCAT 7164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151853898882400