Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq33784 132 4e-26 seq33714 107 1e-18 seq33279 105 5e-18 seq34050 91.5 1e-13 seq31522 86.0 5e-12 seq33157 82.4 6e-11 >seq33784 Length=161669 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||||||||| || || ||| |||||||| ||||| || | Sbjct 105655 CCTCCCCTCAGACGCAGCACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCA 105596 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || || | |||||| || ||||| ||||||||||| ||||| | |||| Sbjct 105595 AGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGA 105536 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||||| ||| ||| | | | || || || ||||||| Sbjct 105535 ATGCCTTCCTTGTCCTGAATCTTTGCTTTAACATTATCAATAGTATCAGAACTCTCCACC 105476 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || ||||| || || ||||| ||||||||| Sbjct 105475 TCAAGAGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCATC 105428 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||| ||||| || || ||| |||||||| ||||| || | Sbjct 105427 CCTCCCCTCAGTCGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCA 105368 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || || | |||||| || ||||| ||||||||||| || || | ||| Sbjct 105367 AGTGTCCTCCCATCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGA 105308 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||||| ||| ||| | | | ||||| |||||| Sbjct 105307 ATGCCTTCCTTGTCCTGAATCTTTGCTTTAACATTGTCAATTGTATCTGAGCTCTCCACT 105248 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || || || || || ||||| |||||||| Sbjct 105247 TCCAATGTGATGGTCTTCCCAGTTAAGGTCTTGACAAAGATCTGCAT 105201 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||| ||||| || || ||| || ||||||||||| || | Sbjct 104654 CCTCCCCTCAGGCGCAGCACTAAATGGAGTGTTGACTCCTTCTGAATATTGTAGTCTGCA 104595 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | | || || | |||||| |||||||| ||||| | ||| || || | |||| Sbjct 104594 AGTGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 104535 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || |||||| ||| || | | | ||||| |||||| Sbjct 104534 ATGCCTTCCTTATCTTGGATCTTTGCTTTAACGTTGTCAATTGTGTCTGAGCTCTCCACT 104475 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || || || || | || |||||||| ||||||||| Sbjct 104474 TCCAATGTGATGGTCTTCCCTGTGAGTGTCTTTACAAAGATCTGCATC 104427 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| || ||||| ||||||||||| ||||| | ||||| ||| |||||| Sbjct 105038 TCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGAATGCCTTCCTTG 104979 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||| ||| | | || || || ||| ||||| | || || Sbjct 104978 TCCTGAATCTTAGCTTTCACATTGTCAATAGTATCAGAACTCTCTACCTCAAGAGTGATG 104919 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| || || ||||| || ||||| Sbjct 104918 GTCTTCCCAGTCAAGGTCTTGACAAAGATTTGCAT 104884 >seq33714 Length=161502 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||||||||| |||||||| || | ||| | || | ||||| | ||| Sbjct 21856 ATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGCAAGAGTGCGTCCATCGTCAAGCTG 21797 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| ||||||| ||||||||| | |||| || ||||| || |||||| Sbjct 21796 CTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTT 21737 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 |||||| | | | ||||| ||| ||||| | || || || || || || Sbjct 21736 AGCCTTTACATTGTCAATGGTATCTGAGCTCTCAACCTCAAGGGTGATGGTCTTGCCAGT 21677 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | |||||||||||| |||||||| Sbjct 21676 TAGAGTTTTTACAAAGATCTGCAT 21653 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || |||||||| || | || | || | || || | ||| Sbjct 23287 ATGAAGGGTGGACTCCTTCTGGATATTGTAGTCTGCAAGTGTGCGTCCATCCTCAAGCTG 23228 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||||||||| | ||| ||||| | |||| || |||||||| |||||| Sbjct 23227 CTTGCCAGCAAATATCAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 23168 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || ||||| ||||||||||| || || || || || || Sbjct 23167 AGCCTTCACATTATCAATAGTATCTGAACTCTCCACCTCCAGAGTGATGGTCTTCCCTGT 23108 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| |||||||| Sbjct 23107 AAGGGTCTTGACAAAGATCTGCAT 23084 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| ||||| || || | || | || | || || | |||||| || ||||| Sbjct 21616 CTCCTTTTGGATATTATAGTCTGCAAGTGTACGGCCATCTTCAAGCTGCTTTCCTGCAAA 21557 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||||||||| | |||| || ||||| || |||||| || ||| Sbjct 21556 AATCAGCCGCTGTTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGCCTTAACATT 21497 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||| | ||||| || ||||| || | ||| ||||| Sbjct 21496 ATCAATGGTATCAGAACTCTCAACCTCGAGAGTAATAGTCTTTCCAGTAAGAGTCTTTAC 21437 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 21436 AAAGATCTGCATC 21424 >seq33279 Length=59633 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || || || ||||||| ||| | | | || ||||||||| Sbjct 11799 TGCAGGGTGGACTCTTTCTGGATGTTATAATCAGCCAGAGTCCTTCCATCTTCCAACTGC 11858 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||| | ||| ||||| | || | |||||||||||| |||||| Sbjct 11859 TTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCTTGAATCTTG 11918 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | || || || |||||||||| ||||| || ||||| ||| Sbjct 11919 GCTTTCACATTGTCAATAGTGTCAGAGCTTTCCACCTCCAAAGTAATGGTCTTTCCAGTC 11978 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| |||||||| Sbjct 11979 AGGGTCTTCACAAATATCTGCAT 12001 >seq34050 Length=239353 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | |||||||| || ||| ||| || || ||||||||||| | Sbjct 44792 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 44851 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| || | ||||| ||||| || ||||| | ||| || |||| || Sbjct 44852 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 44911 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || |||||| || ||| | | | || || ||| ||| Sbjct 44912 ATGCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACC 44971 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | ||||| || || || || | ||||| ||||| ||||||||| Sbjct 44972 TCGAGAGTAATAGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCATC 45019 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | |||||||| || ||| ||| || || ||||||||||| | | Sbjct 44564 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCCGCT 44623 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| || | |||||| ||||| || || || | ||| || || | || Sbjct 44624 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGCCTCTGCTGGTCTGGCGGG 44683 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| ||| || | | | || || || ||| Sbjct 44684 ATTCCCTCCTTGTCCTGGATCTTAGCTTTCACGTTGTCAATCGTATCGGAGCTTTCAACC 44743 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| |||||||| || || || | ||||| || || ||||||||| Sbjct 44744 TCCAAGGTAATCGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCATC 44791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| || ||||||||| || ||| || || ||||||||||| || | ||| |||| Sbjct 44345 AGCCTCAGCACCAAATGAAGGGTGGATTCCTTCTGAATATTGTAGTCGGCTAGGGTTCGG 44404 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || || || | ||| || || | ||| | |||||| Sbjct 44405 CCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGGATTCCCTCC 44464 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || || ||||||| ||| Sbjct 44465 TTGTCTTGGATCTTAGCCTTCACGTTGTCTATGGTGTCAGAGCTTTCAACCTCCAAGGTA 44524 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | ||||| || || ||||||||| Sbjct 44525 ATAGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCATC 44563 >seq31522 Length=43835 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| ||||||||||||| ||| |||| |||| || | ||| || ||||| || Sbjct 28680 TCCTTTTGTATATTGTAATCAGCTAGTGTTCGTCCGTCCTCGAGCTGTTTCCCGGCGAAA 28621 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||| | |||| ||||||| |||| ||||||||||| |||||| Sbjct 28620 ATCAATTGCTGATGATCCGGCGGAATACCCTCCTTGTCTTGAATCTT 28574 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||||| ||| | || |||| || | ||| || | ||| || Sbjct 28909 CTCCTTCTGTATATTGTAATCAGCTAGGGTACGTCCGTCCTCGAGCTGTTTCCGGGCGAA 28850 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| |||||| ||||||| |||| ||||||||||| |||||| || ||| Sbjct 28849 AATCAATCGCTGCTGATCCGGCGGAATACCCTCCTTGTCTTGAATCTTAGCCTTGACATT 28790 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || || ||||||| | |||||| || | || || ||||| || Sbjct 28789 GTCGATCGTATCGGATCTCTTGACCTCCAGAGAAATCGTCTTACGAGTGAAGGTTTTGAC 28730 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 28729 GAAGATCTGCAT 28718 >seq33157 Length=145522 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || || |||||| || || ||||| || | Sbjct 122130 CGCCACCGCGGAGACGAAGCACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCCG 122071 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | || |||| |||| |||||| ||||| || || || ||||| || || | | Sbjct 122070 CCAAGGTCCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCGGGTG 122011 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| ||| || || ||| | | | || || | ||||| Sbjct 122010 GGATTCCCTCCTTGTCTTGAATTTTCGCCTTCACATTGTCGATGGTGTCGGAGGACTCCA 121951 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||||| || ||||| || ||||| | ||||| || || ||||||||| Sbjct 121950 CCTCCAGGGTTATCGTCTTCCCCGTGAGGGTTTTCACGAAGATCTGCATC 121901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380578256800200