Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq34426 84.2 5e-11 >seq34426 Length=214386 Score = 84.2 bits (92), Expect = 5e-11 Identities = 198/293 (68%), Gaps = 11/293 (4%) Strand=Plus/Minus Query 150360 TTCAGATTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGT 150417 ||| |||||| || | | || || || ||| ||| | ||| |||| || || || || Sbjct 59867 TTCGGATTCTCTCGAGAAGGACAAAGAACAATCCGGTTC-TTA-TTGGAGAGCCCGGGGT 59810 Query 150418 TGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGA 150477 ||| |||||| | | ||||| || ||||||||||| || | || || ||||||||| Sbjct 59809 TGGGAAAACAGCAGTTGTTGAAGGCTTAGCACAACGGATTGTTAGAGGCGATGTTCCAAG 59750 Query 150478 TTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAA 150537 | | | |||||| | || | | ||| ||||||| ||||| ||||| | || Sbjct 59749 TAATCTTGCCGATGTTAGACTTATAGCATTGGATATGGGAGCATTGGTGGCTGGAGCAAA 59690 Query 150538 GTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGC 150595 |||| | || || || ||||| | || || | | | ||| ||||| | | ||| Sbjct 59689 GTATAGAGGCGAGTTTGAAGAGAGGCTGAAGGC--TGTTCTAAAAGAAGTTGAGGAAGCA 59632 Query 150596 GATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGG 150645 || | | || ||||| ||||| |||||||| ||| || |||| ||||| Sbjct 59631 GAAGGGAAAGTGATTCTCTTCATTGATGAAATACATTTGGTTTTGGGCGCTGG 59579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146452348945200