Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq34118 145 9e-30 seq33222 116 4e-21 seq34317 114 1e-20 >seq34118 Length=323312 Score = 145 bits (160), Expect = 9e-30 Identities = 221/315 (70%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 165019 TTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGT 165078 ||||||| || ||| | || || || || |||||||| ||||||| || || || Sbjct 7070 TTTTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTA 7011 Query 165079 CCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGA 165138 ||||| || ||| | || ||| ||| | | | || ||||||| || || || |||| Sbjct 7010 GTTTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGA 6951 Query 165139 CCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTG 165198 | | |||| || ||||||||||| |||| ||| | ||||| || ||||||| | Sbjct 6950 CATTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCG 6891 Query 165199 CTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCT 165258 |||||||||| | || || |||||||| |||| || || || || |||||||| | Sbjct 6890 CTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACAT 6831 Query 165259 TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCT 165318 | || ||| | | || || ||||| |||||||| ||| | ||||| |||| || Sbjct 6830 TCTGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACT 6771 Query 165319 TCTGGTCGCAGATCT 165333 | ||||| || |||| Sbjct 6770 TTTGGTCCCAAATCT 6756 >seq33222 Length=111615 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 165081 TTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACC 165140 ||||| || ||||| || ||| ||||| | | || ||||||| || || || ||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 165141 CTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCT 165200 | ||||| || ||||||||||| ||||| ||| | ||||| | | ||||||| || Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 165201 ATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTT 165260 |||||||| | || | |||||||| |||| || ||||| || |||||||| || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 165261 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCAC 165307 || ||| | | || || ||||| |||||||| ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34317 Length=297777 Score = 114 bits (126), Expect = 1e-20 Identities = 142/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 163593 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAG 163652 || |||||| || || |||| ||||||||||||||||| ||||||||| | Sbjct 200225 AGAACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 200284 Query 163653 TCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGA-----ATCTGGTTTACTGCACTG 163707 | ||||||||| | | || |||||||| || || |||||||| || || | Sbjct 200285 GTTACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTA 200343 Query 163708 GGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 163767 || | |||| |||||||||||||| ||||||||||| |||||||| ||| | ||||| Sbjct 200344 GGTATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGAT 200403 Query 163768 GGTCAGGGTCGTG 163780 |||| ||||||| Sbjct 200404 AGTCAAGGTCGTG 200416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562664694712000